Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.0e-23 112.5 54 100.0
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 5.0e-18 93.6 50 84.0
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 1.5e-17 92.0 52 78.8
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.5e-17 92.0 54 77.8
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 2.5e-17 91.3 48 87.5
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 2.5e-17 91.3 50 82.0
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 4.2e-17 90.5 50 82.0
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 4.2e-17 90.5 50 80.0
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 5.5e-17 90.1 52 82.7
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 1.2e-16 89.0 53 75.5
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 1.2e-16 89.0 52 80.8
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 1.2e-16 89.0 54 74.1
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 1.6e-16 88.6 48 83.3
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 2.1e-16 88.2 46 87.0
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 2.8e-16 87.8 52 75.0
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 2.8e-16 87.8 48 81.2
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 2.8e-16 87.8 45 88.9
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 4.7e-16 87.0 52 75.0
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 8.0e-16 86.3 50 78.0
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 1.4e-15 85.5 50 76.0
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.8e-15 85.1 49 77.6
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 1.8e-15 85.1 56 73.2
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 3.0e-15 84.3 51 74.5
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 3.0e-15 84.3 51 74.5
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 3.0e-15 84.3 53 67.9
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 3.0e-15 84.3 51 72.5
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 3.0e-15 84.3 51 72.5
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 4.0e-15 84.0 45 84.4
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 4.0e-15 84.0 51 72.5
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 4.0e-15 84.0 56 71.4
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 5.2e-15 83.6 46 82.6
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 5.2e-15 83.6 44 84.1
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 8.9e-15 82.8 56 71.4
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 1.2e-14 82.4 49 75.5
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 2.0e-14 81.6 46 76.1
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 2.6e-14 81.3 44 79.5
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 2.6e-14 81.3 48 75.0
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 4.4e-14 80.5 51 66.7
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 4.4e-14 80.5 56 67.9
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 5.7e-14 80.1 41 85.4
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 7.5e-14 79.7 46 73.9
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 9.8e-14 79.3 47 72.3
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 9.8e-14 79.3 47 72.3
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 9.8e-14 79.3 41 82.9
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 1.3e-13 79.0 47 70.2
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 1.7e-13 78.6 52 69.2
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 2.2e-13 78.2 49 67.3
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 2.2e-13 78.2 52 65.4
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 2.8e-13 77.8 49 69.4
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 4.9e-13 77.0 45 71.1
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 4.9e-13 77.0 45 71.1
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 4.9e-13 77.0 45 71.1
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 6.3e-13 76.6 48 66.7
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 6.3e-13 76.6 48 66.7
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 6.3e-13 76.6 44 72.7
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 8.3e-13 76.3 44 75.0
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 1.4e-12 75.5 47 68.1
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 1.4e-12 75.5 39 84.6
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 1.8e-12 75.1 46 69.6
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.8e-12 75.1 43 69.8
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 5.4e-12 73.6 47 63.8
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 2.7e-11 71.2 46 63.0
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 2.3e-10 68.2 40 75.0
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 4.7e-08 60.5 67 44.8
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 8.0e-08 59.7 53 58.5
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 3.4e-06 54.3 37 59.5


User provided reference genes

Program Settings