Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.6e-133 478.4 267 100.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.8e-84 316.6 189 94.2
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.2e-81 305.4 191 80.1
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.1e-80 303.1 189 80.4
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.1e-80 303.1 189 80.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.6e-80 302.0 191 79.6
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 7.8e-80 301.2 191 79.6
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.0e-79 300.8 189 80.4
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.3e-79 300.4 189 79.9
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-79 300.4 189 80.4
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.7e-79 300.1 190 80.5
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.7e-79 300.1 190 80.5
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-79 300.1 189 79.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 3.0e-79 299.3 189 81.0
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.0e-79 299.3 189 81.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.9e-79 298.9 191 79.1
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.1e-79 298.5 189 79.4
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 6.6e-79 298.1 189 80.4
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 6.6e-79 298.1 189 79.4
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 8.7e-79 297.7 195 77.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 8.7e-79 297.7 189 80.4
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.5e-78 297.0 189 78.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.5e-78 296.2 191 79.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 5.6e-78 295.0 189 78.3
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.3e-78 294.7 193 77.2
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.6e-78 294.3 189 78.3
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.6e-77 293.5 191 78.5
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.6e-77 293.5 195 76.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.6e-77 293.5 197 75.6
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.6e-77 292.4 189 78.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 3.6e-77 292.4 191 77.0
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.8e-77 292.0 191 77.0
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 8.1e-77 291.2 191 76.4
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.1e-77 291.2 189 78.3
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 8.1e-77 291.2 189 78.3
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.1e-76 290.8 189 77.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.4e-76 290.4 189 78.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.4e-76 290.4 189 76.7
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.4e-76 290.4 189 76.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.4e-76 290.4 189 78.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.8e-76 290.0 190 75.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.4e-76 289.7 197 76.1
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.4e-76 289.7 189 75.7
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 4.0e-76 288.9 191 78.0
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.0e-76 288.9 189 78.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.0e-76 288.9 189 78.8
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.3e-76 288.5 190 76.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 6.9e-76 288.1 189 76.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 6.9e-76 288.1 189 76.2
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 9.0e-76 287.7 190 76.3
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.2e-75 287.3 191 76.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.0e-75 286.6 191 74.3
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.0e-75 286.6 191 76.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.6e-75 286.2 191 78.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.6e-75 286.2 189 77.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 4.4e-75 285.4 191 75.9
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.4e-75 285.4 189 76.2
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 5.8e-75 285.0 189 77.8
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.8e-75 285.0 198 73.7
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 7.6e-75 284.6 189 75.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 7.6e-75 284.6 189 77.8
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.6e-75 284.6 189 76.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.6e-75 284.6 189 76.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 9.9e-75 284.3 191 75.9
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.7e-74 283.5 212 69.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.7e-74 283.5 161 87.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.2e-74 283.1 191 75.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.9e-74 282.7 191 73.8
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.8e-74 282.3 190 76.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.4e-74 281.6 189 74.6
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.4e-74 281.6 189 74.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.4e-74 281.6 189 76.2
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 8.4e-74 281.2 189 75.7
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 8.4e-74 281.2 198 73.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.4e-73 280.4 215 70.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.9e-73 280.0 189 74.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.4e-73 279.6 189 75.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.2e-73 279.3 221 67.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.2e-73 278.9 191 76.4
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 7.1e-73 278.1 204 76.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.2e-72 277.3 190 74.2
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.2e-72 277.3 189 74.6
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-72 276.9 191 74.9
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.6e-72 276.9 189 74.1
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.6e-72 276.9 189 74.6
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.1e-72 276.6 192 73.4
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.7e-72 276.2 189 74.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.7e-72 276.2 195 73.3
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.5e-72 275.8 189 74.6
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.5e-72 275.8 191 72.8
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 4.6e-72 275.4 198 73.7
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.6e-72 275.4 197 74.6
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.0e-72 275.0 189 74.6
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 7.9e-72 274.6 191 76.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.3e-71 273.9 232 63.4
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.7e-71 273.5 189 73.5
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.7e-71 273.5 189 73.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.0e-71 272.7 189 74.6
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 5.1e-71 271.9 191 71.2
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.1e-71 271.9 191 73.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 5.1e-71 271.9 195 71.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 6.6e-71 271.6 189 74.1
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.7e-71 271.2 189 73.5
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.5e-70 270.4 193 73.6
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.3e-70 269.2 189 74.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 5.6e-70 268.5 189 74.6
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 9.6e-70 267.7 192 71.9
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.1e-69 266.5 192 71.4
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 6.2e-69 265.0 191 71.7
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.4e-68 263.8 193 69.4
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-67 260.8 191 72.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.0e-67 260.0 199 66.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.0e-67 260.0 199 66.3
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.6e-67 259.6 190 70.5
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 3.4e-67 259.2 160 79.4
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 5.8e-67 258.5 155 81.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 5.8e-67 258.5 162 79.0
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.8e-67 258.5 194 68.6
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 9.9e-67 257.7 194 68.6
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-66 257.3 144 87.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.2e-66 256.5 193 68.4
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.4e-66 255.0 191 70.7
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.4e-65 253.8 181 71.8
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.4e-65 253.1 190 68.9
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.4e-65 253.1 155 78.7
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.4e-65 253.1 155 79.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.4e-65 253.1 156 80.8
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.4e-65 253.1 191 71.7
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.5e-65 251.9 161 78.3
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.6e-64 250.4 155 78.7
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.6e-64 250.4 160 76.9
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.6e-64 250.4 160 76.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.7e-64 249.6 151 79.5
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 7.9e-64 248.1 244 59.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 7.9e-64 248.1 155 78.1
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 7.9e-64 248.1 155 78.1
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 7.9e-64 248.1 155 78.1
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.3e-63 246.5 149 78.5
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.3e-63 246.5 155 77.4
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 6.7e-63 245.0 155 78.1
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.3e-62 242.7 146 79.5
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 4.3e-62 242.3 151 78.8
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 5.6e-62 241.9 146 78.8
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 9.6e-62 241.1 162 75.3
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.6e-61 240.4 146 78.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.6e-61 240.4 150 78.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 3.7e-61 239.2 146 78.1
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 3.7e-61 239.2 146 78.1
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.2e-59 234.2 150 76.7
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.1e-57 227.6 159 70.4
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 7.9e-56 221.5 199 62.8
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.7e-40 169.9 149 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 8.8e-39 164.9 143 60.1
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 7.4e-38 161.8 151 52.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.7e-29 132.9 74 91.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.4e-28 130.2 92 70.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.0e-28 128.6 96 66.7
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-27 127.5 160 44.4
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.5e-25 120.2 76 78.9
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.3e-21 107.8 134 44.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 4.5e-19 99.4 157 42.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.0e-15 88.2 127 41.7
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.5e-11 72.8 40 80.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 7.7e-11 72.0 40 80.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.5e-10 68.9 40 77.5
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.4e-07 61.2 139 33.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 6.8e-07 58.9 86 33.7
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 8.8e-07 58.5 42 59.5


User provided reference genes

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