Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 5.8e-65 250.8 128 100.0
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 9.6e-60 233.4 128 96.1
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 1.2e-46 189.9 120 80.0
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 3.5e-46 188.3 122 75.4
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 3.5e-46 188.3 126 75.4
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 3.5e-46 188.3 118 78.0
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 3.5e-46 188.3 118 78.8
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 3.5e-46 188.3 118 78.8
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 3.0e-45 185.3 119 78.2
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 5.1e-45 184.5 122 75.4
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 6.7e-45 184.1 120 77.5
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 6.7e-45 184.1 122 76.2
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 8.7e-45 183.7 128 69.5
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 8.7e-45 183.7 120 76.7
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 1.1e-44 183.3 104 84.6
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 1.9e-44 182.6 122 73.0
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 2.5e-44 182.2 103 85.4
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 2.5e-44 182.2 104 82.7
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 3.3e-44 181.8 115 77.4
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 5.7e-44 181.0 108 80.6
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 5.7e-44 181.0 108 81.5
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 5.7e-44 181.0 111 79.3
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 5.7e-44 181.0 108 81.5
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 5.7e-44 181.0 113 77.0
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 7.4e-44 180.6 121 75.2
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 7.4e-44 180.6 104 83.7
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 9.7e-44 180.3 108 80.6
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 1.3e-43 179.9 107 81.3
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 1.3e-43 179.9 108 81.5
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 1.3e-43 179.9 115 75.7
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 1.6e-43 179.5 102 84.3
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 1.6e-43 179.5 108 80.6
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.6e-43 179.5 108 80.6
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.6e-43 179.5 101 87.1
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.2e-43 179.1 116 76.7
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 2.2e-43 179.1 107 80.4
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 2.2e-43 179.1 101 85.1
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 2.8e-43 178.7 108 79.6
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 2.8e-43 178.7 104 82.7
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 6.3e-43 177.6 126 72.2
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 6.3e-43 177.6 125 70.4
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 8.2e-43 177.2 103 81.6
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 1.1e-42 176.8 119 71.4
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.1e-42 176.8 117 74.4
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 1.1e-42 176.8 107 79.4
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 1.1e-42 176.8 107 81.3
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.1e-42 176.8 113 77.0
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 1.1e-42 176.8 121 71.9
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 1.1e-42 176.8 108 78.7
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.4e-42 176.4 108 79.6
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 1.4e-42 176.4 110 76.4
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 1.4e-42 176.4 110 76.4
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 1.4e-42 176.4 110 76.4
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 1.4e-42 176.4 116 73.3
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 1.8e-42 176.0 103 81.6
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 2.4e-42 175.6 118 72.9
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 2.4e-42 175.6 99 82.8
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 3.1e-42 175.3 101 84.2
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 3.1e-42 175.3 114 75.4
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 3.1e-42 175.3 113 75.2
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 3.1e-42 175.3 108 78.7
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 4.1e-42 174.9 114 74.6
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 4.1e-42 174.9 114 74.6
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 4.1e-42 174.9 114 74.6
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 4.1e-42 174.9 114 74.6
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 4.1e-42 174.9 103 83.5
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 5.3e-42 174.5 114 74.6
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 5.3e-42 174.5 111 75.7
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 6.9e-42 174.1 108 77.8
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 9.0e-42 173.7 125 68.0
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 9.0e-42 173.7 119 72.3
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 9.0e-42 173.7 99 84.8
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 9.0e-42 173.7 103 81.6
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 1.2e-41 173.3 108 78.7
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 1.2e-41 173.3 108 78.7
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 1.5e-41 172.9 126 67.5
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 2.0e-41 172.6 125 67.2
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 2.0e-41 172.6 125 67.2
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 2.0e-41 172.6 103 81.6
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 2.0e-41 172.6 113 74.3
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 2.6e-41 172.2 108 78.7
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 4.5e-41 171.4 113 74.3
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 4.5e-41 171.4 113 74.3
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 4.5e-41 171.4 119 70.6
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 5.9e-41 171.0 104 78.8
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 1.0e-40 170.2 105 75.2
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 1.0e-40 170.2 103 79.6
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 1.3e-40 169.9 122 69.7
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 1.7e-40 169.5 110 76.4
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 1.7e-40 169.5 101 79.2
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 2.2e-40 169.1 125 66.4
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 3.8e-40 168.3 108 75.9
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 1.1e-39 166.8 108 75.0
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 1.1e-39 166.8 105 73.3
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 1.4e-39 166.4 103 74.8
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 1.9e-39 166.0 103 79.6
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 1.9e-39 166.0 113 69.9
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 3.2e-39 165.2 117 69.2
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 4.6e-38 161.4 107 72.0
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 3.0e-37 158.7 103 74.8
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 3.3e-36 155.2 132 62.1
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 8.2e-35 150.6 107 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 1.7e-32 142.9 111 61.3
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 2.9e-32 142.1 101 66.3
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 3.8e-32 141.7 104 62.5
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 1.4e-29 133.3 105 60.0
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 6.7e-29 131.0 89 70.8
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 3.3e-28 128.6 69 88.4
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 3.1e-26 122.1 74 78.4
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 4.1e-26 121.7 67 94.0
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 6.5e-24 114.4 63 85.7
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 8.2e-19 97.4 95 48.4
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 4.1e-18 95.1 54 83.3
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 4.5e-17 91.7 74 58.1
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 3.2e-15 85.5 44 86.4
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.6e-14 83.2 62 66.1
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 7.0e-10 67.8 44 68.2


User provided reference genes

Program Settings