Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 2.8e-125 452.2 270 100.0
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.6e-67 259.6 211 62.6
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 2.9e-66 256.1 191 73.3
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 5.5e-65 251.9 211 61.6
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.0e-63 246.1 211 60.2
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 6.7e-63 245.0 212 61.3
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 3.3e-62 242.7 213 59.6
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 4.4e-62 242.3 211 59.7
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 7.4e-62 241.5 245 55.5
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 9.7e-62 241.1 211 59.2
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 2.0e-59 233.4 216 59.3
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 5.9e-59 231.9 218 56.0
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 6.5e-58 228.4 215 59.1
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 1.1e-57 227.6 213 56.8
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 3.2e-57 226.1 219 55.7
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.2e-57 226.1 126 84.1
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 3.2e-57 226.1 202 60.4
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 5.5e-57 225.3 214 56.1
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 5.5e-57 225.3 220 55.9
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 9.4e-57 224.6 217 56.2
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 9.4e-57 224.6 215 56.7
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 9.4e-57 224.6 213 57.3
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.2e-56 224.2 214 60.3
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 2.1e-56 223.4 214 58.4
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.1e-56 223.4 214 57.5
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 2.1e-56 223.4 219 58.4
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 2.7e-56 223.0 214 59.8
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 3.6e-56 222.6 215 58.1
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 3.6e-56 222.6 215 59.1
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 6.1e-56 221.9 205 59.5
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 8.0e-56 221.5 215 58.6
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 8.0e-56 221.5 205 61.0
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 8.0e-56 221.5 210 58.1
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.0e-55 221.1 214 57.5
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.0e-55 221.1 214 57.5
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.0e-55 221.1 220 55.5
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.4e-55 220.7 214 57.5
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 1.4e-55 220.7 203 61.1
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.4e-55 220.7 217 56.7
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.4e-55 220.7 214 57.5
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.8e-55 220.3 208 57.2
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 2.3e-55 219.9 215 57.2
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 2.3e-55 219.9 147 72.8
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 2.3e-55 219.9 147 72.8
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 3.0e-55 219.5 217 56.2
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 3.0e-55 219.5 213 57.3
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.0e-55 219.2 217 56.7
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 5.2e-55 218.8 223 54.3
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 5.2e-55 218.8 201 62.7
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 6.8e-55 218.4 205 59.0
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 8.8e-55 218.0 200 62.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.2e-54 217.6 210 56.7
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 1.2e-54 217.6 225 54.2
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.5e-54 217.2 210 59.0
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.5e-54 217.2 200 62.0
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 1.5e-54 217.2 143 74.1
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 2.0e-54 216.9 215 57.2
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 2.6e-54 216.5 214 55.6
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 2.6e-54 216.5 217 51.6
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 2.6e-54 216.5 214 53.3
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 2.6e-54 216.5 201 61.7
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 2.6e-54 216.5 215 56.7
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 3.4e-54 216.1 211 59.2
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 3.4e-54 216.1 212 57.1
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 5.7e-54 215.3 213 56.8
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 5.7e-54 215.3 217 54.4
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 7.5e-54 214.9 215 52.6
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 7.5e-54 214.9 201 61.2
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 9.8e-54 214.5 204 58.3
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 1.3e-53 214.2 212 57.5
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 1.3e-53 214.2 215 53.0
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 1.7e-53 213.8 204 58.3
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.7e-53 213.8 199 61.3
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.7e-53 213.8 214 56.5
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.7e-53 213.8 206 57.3
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 2.8e-53 213.0 204 60.3
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 3.7e-53 212.6 199 61.8
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 3.7e-53 212.6 155 67.7
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 3.7e-53 212.6 199 60.3
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 4.8e-53 212.2 203 57.6
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 4.8e-53 212.2 200 60.0
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 4.8e-53 212.2 200 60.0
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 6.3e-53 211.8 214 54.2
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 6.3e-53 211.8 212 53.3
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 8.3e-53 211.5 213 56.3
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 8.3e-53 211.5 212 57.1
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 1.1e-52 211.1 219 53.4
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 1.8e-52 210.3 213 55.9
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.8e-52 210.3 205 57.1
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 1.8e-52 210.3 206 58.7
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 1.8e-52 210.3 219 53.9
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 2.4e-52 209.9 214 55.6
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 3.1e-52 209.5 210 53.8
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 3.1e-52 209.5 205 57.6
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 3.1e-52 209.5 214 56.1
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 4.1e-52 209.1 198 54.5
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.4e-52 208.8 218 56.0
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 5.4e-52 208.8 141 70.9
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 7.0e-52 208.4 218 53.2
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.6e-51 207.2 147 68.0
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.6e-51 207.2 134 74.6
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.6e-51 207.2 153 68.0
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 3.5e-51 206.1 125 76.8
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 4.5e-51 205.7 211 55.5
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 4.5e-51 205.7 218 54.1
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 5.9e-51 205.3 221 51.6
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 5.9e-51 205.3 221 55.2
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 7.7e-51 204.9 219 51.6
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 1.0e-50 204.5 213 54.5
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 1.7e-50 203.8 199 56.8
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 2.2e-50 203.4 198 57.1
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 2.9e-50 203.0 225 53.8
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 3.8e-50 202.6 220 55.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.5e-50 201.4 197 55.8
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 1.1e-49 201.1 212 53.3
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.1e-49 201.1 119 81.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.5e-49 200.7 212 53.3
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.5e-49 199.9 212 53.8
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 3.2e-49 199.5 212 52.4
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 4.2e-49 199.1 210 53.8
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 4.2e-49 199.1 210 53.8
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 4.2e-49 199.1 219 50.2
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 5.5e-49 198.7 212 53.3
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.2e-48 197.6 220 50.0
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 2.1e-48 196.8 212 52.8
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.0e-47 194.5 214 52.3
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 8.8e-47 191.4 220 46.4
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 8.8e-47 191.4 220 46.4
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 8.8e-47 191.4 220 46.4
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 8.8e-47 191.4 214 51.4
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.2e-46 191.0 230 49.1
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.5e-46 190.7 228 46.1
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.0e-46 190.3 114 79.8
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.0e-46 190.3 112 82.1
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 2.6e-46 189.9 227 45.4
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 2.6e-46 189.9 204 55.9
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 5.7e-46 188.7 124 75.8
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 7.5e-46 188.3 212 50.0
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.3e-45 187.6 114 80.7
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 2.4e-44 183.3 102 81.4
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 3.1e-44 183.0 129 66.7
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 4.1e-44 182.6 215 52.1
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 5.9e-43 178.7 213 51.2
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 1.3e-42 177.6 209 50.2
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 1.7e-42 177.2 188 55.3
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 3.8e-42 176.0 219 47.5
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.2e-40 171.0 234 45.3
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 8.0e-40 168.3 191 56.0
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 2.3e-39 166.8 191 55.0
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 8.9e-39 164.9 95 83.2
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.2e-38 164.5 193 52.3
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.3e-37 161.0 115 65.2
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 8.3e-37 158.3 188 51.1
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 8.3e-37 158.3 99 76.8
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 5.4e-36 155.6 142 63.4
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 6.6e-34 148.7 194 45.9
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 2.5e-33 146.7 127 61.4
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 3.3e-33 146.4 171 49.1
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.1e-32 143.7 134 56.7
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 2.8e-32 143.3 168 47.6
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 3.6e-32 142.9 100 69.0
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 4.7e-32 142.5 124 60.5
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.0e-31 141.4 190 45.8
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 6.8e-31 138.7 164 48.8
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 8.9e-31 138.3 172 44.8
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 1.3e-29 134.4 183 48.1
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 3.2e-28 129.8 175 48.0
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 7.0e-28 128.6 177 41.8
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 2.7e-27 126.7 188 42.0
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 7.8e-27 125.2 164 43.3
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 2.5e-25 120.2 176 38.6
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 1.2e-24 117.9 105 65.7
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 8.9e-23 111.7 67 74.6
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 4.3e-17 92.8 155 36.1
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.2e-16 91.3 50 78.0
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 1.2e-14 84.7 153 43.1
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 2.0e-14 84.0 91 48.4
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 2.4e-12 77.0 148 35.1
MCO04G029 Micromonas commoda HOM05D003598 ORTHO05D004198 1.1e-07 61.6 57 50.9
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 4.0e-07 59.7 138 33.3


User provided reference genes

Program Settings