Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001920 Simmondsia chinensis HOM05D011919 ORTHO05D014264 7.1e-300 1033.1 506 100.0
Sc12g0009830 Simmondsia chinensis HOM05D011919 ORTHO05D014264 2.9e-83 313.5 192 80.2
Sc18g0004620 Simmondsia chinensis HOM05D011919 ORTHO05D014264 8.4e-83 312.0 361 50.1
Sc12g0009840 Simmondsia chinensis HOM05D011919 ORTHO05D014264 1.8e-80 304.3 192 78.6
Sc16g0004280 Simmondsia chinensis HOM05D011919 ORTHO05D014264 6.5e-75 285.8 215 65.1
Sc26g0003430 Simmondsia chinensis HOM05D011919 ORTHO05D014264 7.9e-73 278.9 168 76.8
Sc12g0008990 Simmondsia chinensis HOM05D011919 ORTHO05D014264 1.5e-68 264.6 183 70.5
Sc10g0006850 Simmondsia chinensis HOM05D011919 ORTHO05D014264 1.4e-50 204.9 127 77.2
Sc01g0004580 Simmondsia chinensis HOM05D002584 ORTHO05D002736 2.1e-49 201.1 179 60.9
Sc12g0007440 Simmondsia chinensis HOM05D011919 ORTHO05D014264 3.5e-44 183.7 129 68.2
Sc03g0005150 Simmondsia chinensis HOM05D011919 ORTHO05D014264 2.2e-43 181.0 149 59.1
Sc22g0004130 Simmondsia chinensis HOM05D011919 ORTHO05D014264 3.8e-43 180.3 108 73.1
Sc02g0003860 Simmondsia chinensis HOM05D011919 ORTHO05D014264 8.5e-43 179.1 116 71.6
Sc18g0005880 Simmondsia chinensis HOM05D011919 ORTHO05D014264 1.7e-38 164.9 414 31.6
Sc20g0004100 Simmondsia chinensis HOM05D011919 ORTHO05D014264 3.7e-22 110.5 74 67.6
Sc09g0006850 Simmondsia chinensis HOM05D011919 ORTHO05D014264 3.8e-19 100.5 65 72.3
CANSAT25G1234 Cannabis sativa HOM05D023333 ORTHO05D000137 3.6e-17 94.0 264 25.4
CANSAT25G0378 Cannabis sativa HOM05D000679 ORTHO05D000137 8.9e-16 89.4 272 26.1
CANSAT25G0487 Cannabis sativa HOM05D008721 ORTHO05D000137 7.5e-15 86.3 254 28.0
CANSAT80G1051 Cannabis sativa HOM05D008721 ORTHO05D000137 9.8e-15 85.9 254 28.0
CANSAT25G1319 Cannabis sativa HOM05D000679 ORTHO05D000137 2.9e-14 84.3 252 25.8
CANSAT25G3227 Cannabis sativa HOM05D008721 ORTHO05D000137 1.1e-13 82.4 254 26.8
TWI18G0445 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.1e-13 82.4 262 26.0
TWI39G0946 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.1e-13 82.4 262 26.0
TWI77G0850 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.1e-13 82.4 262 26.0
CANSAT80G2652 Cannabis sativa HOM05D023333 ORTHO05D000137 1.4e-13 82.0 262 26.3
ATR0441G001 Amborella trichopoda HOM05D008721 ORTHO05D000137 1.8e-13 81.6 234 29.5
TWI32G1169 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.8e-13 81.6 217 30.9
TWI53G0735 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.8e-13 81.6 210 31.0
TWI63G0551 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.8e-13 81.6 210 31.0
TWI74G0229 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.8e-13 81.6 210 31.4
TWI79G1717 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.8e-13 81.6 210 31.0
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 2.4e-13 81.3 208 27.9
TWI63G1251 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 4.1e-13 80.5 262 25.6
CANSAT54G2098 Cannabis sativa HOM05D000679 ORTHO05D000137 5.4e-13 80.1 313 25.9
TWI36G1743 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 5.4e-13 80.1 210 31.4
CANSAT64G1718 Cannabis sativa HOM05D017160 ORTHO05D000137 7.0e-13 79.7 221 25.8
TWI18G0558 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 7.0e-13 79.7 210 30.5
TWI38G1257 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 7.0e-13 79.7 207 29.5
CANSAT54G2653 Cannabis sativa HOM05D000679 ORTHO05D000137 2.0e-12 78.2 313 25.9
CANSAT35G0046 Cannabis sativa HOM05D000679 ORTHO05D000137 3.5e-12 77.4 244 27.0
CANSAT11G1718 Cannabis sativa HOM05D009472 ORTHO05D000137 7.8e-12 76.3 262 25.6
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 7.8e-12 76.3 197 26.9
PGSC0003DMG400037565 Solanum tuberosum HOM05D000679 ORTHO05D000137 1.0e-11 75.9 241 24.9
CANSAT11G0653 Cannabis sativa HOM05D009472 ORTHO05D000137 3.0e-11 74.3 240 25.0
SGA_v2.0_scaffold23G10125 Striga asiatica HOM05D000679 ORTHO05D000137 5.0e-11 73.6 262 27.1
CANSAT21G0269 Cannabis sativa HOM05D009472 ORTHO05D000137 6.6e-11 73.2 263 24.7
Oeu025536.1 Olea europaea HOM05D002749 ORTHO05D000708 6.6e-11 73.2 197 26.9
CANSAT80G2627 Cannabis sativa HOM05D009472 ORTHO05D000137 1.1e-10 72.4 263 24.7
TWI77G0212 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.9e-10 71.6 211 28.0
TWI23G0222 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 3.3e-10 70.9 187 28.3
PGSC0003DMG400043182 Solanum tuberosum HOM05D000679 ORTHO05D000137 5.6e-10 70.1 254 23.2
CANSAT54G1761 Cannabis sativa HOM05D008721 ORTHO05D000137 9.5e-10 69.3 146 32.9
TWI59G0262 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.2e-09 68.9 219 24.7
TWI75G0282 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.2e-09 68.9 219 24.7
CANSAT21G0042 Cannabis sativa HOM05D009472 ORTHO05D000137 1.6e-09 68.6 222 25.2
TWI18G1213 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.6e-09 68.6 219 24.2
Thhalv10000546m.g Eutrema salsugineum HOM05D000977 ORTHO05D001094 3.6e-09 67.4 218 28.4
Oeu054335.1 Olea europaea HOM05D000700 ORTHO05D000397 3.6e-09 67.4 289 24.2
TWI38G1152 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 3.6e-09 67.4 219 24.2
Sopen12g022620 Solanum pennellii HOM05D010988 ORTHO05D000137 4.7e-09 67.0 252 23.4
CANSAT21G0642 Cannabis sativa HOM05D008721 ORTHO05D000137 8.0e-09 66.2 143 30.1
TWI77G0217 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 8.0e-09 66.2 221 23.5
SGA_v2.0_scaffold304G47894 Striga asiatica HOM05D008585 ORTHO05D000397 1.0e-08 65.9 257 23.7
SGA_v2.0_scaffold9G04780 Striga asiatica HOM05D008585 ORTHO05D000397 1.0e-08 65.9 251 24.3
TWI77G0986 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.0e-08 65.9 135 31.1
SGA_v2.0_scaffold21G09322 Striga asiatica HOM05D008585 ORTHO05D000397 1.4e-08 65.5 262 23.7
TWI81G0979 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.4e-08 65.5 207 27.5
Nitab4.5_0000814g0130 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.8e-08 65.1 208 25.0
SGA_v2.0_scaffold65G22150 Striga asiatica HOM05D008585 ORTHO05D000397 1.8e-08 65.1 283 23.0
BolC3t20959H Brassica oleracea HOM05D000471 ORTHO05D000199 2.3e-08 64.7 192 25.5
CANSAT78G0078 Cannabis sativa HOM05D009472 ORTHO05D000137 2.3e-08 64.7 151 29.1
Nitab4.5_0013025g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 3.1e-08 64.3 197 24.9
Nitab4.5_0000207g0350 Nicotiana tabacum HOM05D000679 ORTHO05D000137 5.2e-08 63.5 209 26.8
PSO210G3358 Papaver somniferum HOM05D002639 ORTHO05D003094 5.2e-08 63.5 233 26.2
Aa31LG8G11990 Aethionema arabicum HOM05D001285 ORTHO05D000199 8.9e-08 62.8 277 26.0
BcaC05g25704 Brassica carinata HOM05D000977 ORTHO05D001094 8.9e-08 62.8 216 23.6
COL.COLO4_13861 Corchorus olitorius HOM05D002639 ORTHO05D003094 1.2e-07 62.4 293 27.3
MBI17_g28664_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 1.2e-07 62.4 100 32.0
Aa31LG10G8940 Aethionema arabicum HOM05D000471 ORTHO05D000199 1.5e-07 62.0 232 25.4
MBI14_g41773_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 1.5e-07 62.0 217 24.9
MBI17_g12496_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 1.5e-07 62.0 99 33.3
Oeu018210.1 Olea europaea HOM05D002749 ORTHO05D000708 1.5e-07 62.0 196 23.0
PSO832G1526 Papaver somniferum HOM05D002639 ORTHO05D003094 1.5e-07 62.0 209 25.8
MBI05_g05140_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.0e-07 61.6 106 31.1
PSO832G1698 Papaver somniferum HOM05D002639 ORTHO05D003094 2.0e-07 61.6 220 25.5
MBI18_g11471_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.6e-07 61.2 109 32.1
QL08p032772 Quercus lobata HOM05D022192 ORTHO05D009908 2.6e-07 61.2 201 22.4
Oeu006041.1 Olea europaea HOM05D008641 ORTHO05D000397 3.4e-07 60.8 192 25.5
Oeu009393.1 Olea europaea HOM05D009665 ORTHO05D011335 3.4e-07 60.8 267 21.3
CANSAT35G1242 Cannabis sativa HOM05D000679 ORTHO05D000137 4.4e-07 60.5 162 29.0
CAN.G405.8 Capsicum annuum HOM05D000541 ORTHO05D000137 4.4e-07 60.5 144 30.6
Oeu026953.1 Olea europaea HOM05D008641 ORTHO05D000397 4.4e-07 60.5 193 25.9
Oeu047270.2 Olea europaea HOM05D000700 ORTHO05D000397 4.4e-07 60.5 334 21.6
Thhalv10012310m.g Eutrema salsugineum HOM05D000977 ORTHO05D001094 5.8e-07 60.1 146 32.2
MBI05_g36590_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 5.8e-07 60.1 106 34.9
MBI06_g27483_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 5.8e-07 60.1 109 33.0
MBI08_g32520_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 5.8e-07 60.1 119 31.1
TWI63G1349 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 5.8e-07 60.1 210 24.3
MBI02_g32907_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 7.5e-07 59.7 125 33.6
Medtr4g119970 Medicago truncatula HOM05D002639 ORTHO05D003094 9.8e-07 59.3 259 23.2
Oeu027704.1 Olea europaea HOM05D002749 ORTHO05D000708 9.8e-07 59.3 106 28.3
MBI14_g18539_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 1.3e-06 58.9 116 27.6
TWI18G0265 Tripterygium wilfordii HOM05D007816 ORTHO05D000397 1.3e-06 58.9 111 33.3
MBI15_g38814_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 1.7e-06 58.5 290 22.1
MBI11_g20916_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.2e-06 58.2 100 29.0
QL09p039396 Quercus lobata HOM05D022192 ORTHO05D009908 2.2e-06 58.2 155 25.8
SMO115G0256 Selaginella moellendorffii HOM05D002639 ORTHO05D003094 2.2e-06 58.2 209 27.3
SGA_v2.0_scaffold428G51524 Striga asiatica HOM05D002639 ORTHO05D003094 2.2e-06 58.2 199 25.1
AT3G06910 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 2.9e-06 57.8 209 25.4
CiPaw.02G082600 Carya illinoinensis HOM05D002639 ORTHO05D003094 2.9e-06 57.8 312 23.4
MBI12_g37479_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 2.9e-06 57.8 99 31.3
MBI15_g09755_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 3.7e-06 57.4 100 30.0
MBI15_g35153_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 3.7e-06 57.4 123 27.6
MBI18_g04001_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 3.7e-06 57.4 110 33.6
Sabra10G0008800 Salix brachista HOM05D002639 ORTHO05D003094 3.7e-06 57.4 320 23.1
Aa31LG11G7530 Aethionema arabicum HOM05D000471 ORTHO05D000199 4.9e-06 57.0 229 24.9
BolC7t45274H Brassica oleracea HOM05D002639 ORTHO05D003094 4.9e-06 57.0 300 24.3
MBI17_g39744_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 4.9e-06 57.0 110 33.6
ATR0796G180 Amborella trichopoda HOM05D002639 ORTHO05D003094 6.4e-06 56.6 197 26.9
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 6.4e-06 56.6 201 25.4
MBI17_g25957_MAGBIO Magnolia biondii HOM05D002823 ORTHO05D003025 6.4e-06 56.6 123 27.6
PSO170G1158 Papaver somniferum HOM05D002639 ORTHO05D003094 6.4e-06 56.6 201 26.4
C07p47470 Brassica napus HOM05D002639 ORTHO05D003094 8.3e-06 56.2 300 24.3
TAR376G0876 Trochodendron aralioides HOM05D002823 ORTHO05D003025 8.3e-06 56.2 118 32.2
TAR636G2312 Trochodendron aralioides HOM05D002639 ORTHO05D003094 8.3e-06 56.2 201 26.4


User provided reference genes

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