Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.7e-168 595.9 293 100.0
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 4.7e-110 401.7 290 69.0
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 6.7e-109 397.9 291 69.4
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 6.7e-109 397.9 229 82.5
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 1.5e-108 396.7 283 71.0
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.5e-108 396.7 227 81.5
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 2.6e-108 396.0 284 70.8
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 2.6e-108 396.0 231 80.5
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 9.7e-108 394.0 283 71.4
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 9.7e-108 394.0 283 68.6
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.7e-107 393.3 291 69.8
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.2e-107 392.9 283 70.3
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.2e-107 392.9 285 70.2
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 2.2e-107 392.9 297 68.0
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 2.8e-107 392.5 287 70.4
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 3.7e-107 392.1 290 69.0
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 6.3e-107 391.3 238 77.3
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 6.3e-107 391.3 238 79.0
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 8.3e-107 391.0 288 68.8
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.1e-106 390.6 286 69.2
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 1.4e-106 390.2 284 71.1
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.1e-106 389.0 283 70.0
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 7.0e-106 387.9 285 68.1
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 7.0e-106 387.9 265 70.9
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.1e-106 387.5 287 69.3
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 1.2e-105 387.1 283 68.2
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.0e-105 386.3 225 81.3
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 2.7e-105 386.0 287 67.2
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.5e-105 385.6 284 70.8
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 3.5e-105 385.6 286 69.2
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 4.5e-105 385.2 256 72.3
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 5.9e-105 384.8 276 68.5
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 7.7e-105 384.4 235 76.2
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 7.7e-105 384.4 291 68.0
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.0e-104 384.0 286 68.5
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 1.0e-104 384.0 261 71.6
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.0e-104 384.0 259 74.1
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 5.0e-104 381.7 273 68.5
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 5.0e-104 381.7 276 68.8
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 6.5e-104 381.3 262 72.5
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 8.5e-104 380.9 263 70.7
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 8.5e-104 380.9 223 81.6
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 8.5e-104 380.9 282 68.4
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 8.5e-104 380.9 290 67.6
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.5e-103 380.2 288 68.1
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.9e-103 379.8 290 68.6
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 3.2e-103 379.0 285 69.8
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 9.4e-103 377.5 227 77.1
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.2e-102 377.1 226 78.8
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 2.1e-102 376.3 284 69.0
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 2.7e-102 375.9 283 68.6
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 3.6e-102 375.6 254 73.2
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 3.6e-102 375.6 260 71.5
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 6.1e-102 374.8 228 78.9
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 8.0e-102 374.4 223 78.9
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.0e-101 374.0 227 77.5
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.8e-101 373.2 266 71.1
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 4.0e-101 372.1 283 67.1
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 4.0e-101 372.1 253 72.3
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 5.2e-101 371.7 288 65.3
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 8.8e-101 370.9 283 64.0
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.5e-100 370.2 283 66.8
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 2.0e-100 369.8 250 70.4
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.6e-100 369.4 288 66.3
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 3.4e-100 369.0 279 67.0
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 3.4e-100 369.0 279 66.3
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 3.4e-100 369.0 222 77.0
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 4.4e-100 368.6 241 72.2
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 4.4e-100 368.6 292 66.1
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 4.4e-100 368.6 283 63.6
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 7.5e-100 367.9 284 66.9
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 9.8e-100 367.5 285 66.0
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 9.8e-100 367.5 294 65.0
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.7e-99 366.7 266 69.9
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.7e-99 365.5 250 69.2
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 6.3e-99 364.8 279 66.3
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 8.3e-99 364.4 232 76.3
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 1.8e-98 363.2 224 76.8
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 9.1e-98 360.9 290 64.8
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 1.2e-97 360.5 223 76.7
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.7e-97 359.4 290 64.5
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 7.7e-97 357.8 266 68.0
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 1.0e-96 357.5 293 65.5
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 1.0e-96 357.5 272 67.6
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.3e-96 357.1 284 65.8
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.9e-96 355.9 253 67.6
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 6.6e-96 354.8 253 68.4
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 4.7e-94 348.6 225 73.8
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 3.0e-93 345.9 289 63.0
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.7e-91 340.1 284 63.0
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 1.7e-91 340.1 282 62.1
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 9.2e-90 334.3 209 77.5
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 7.8e-89 331.3 293 60.1
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.3e-88 329.7 253 68.0
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 2.9e-88 329.3 250 65.2
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 3.9e-88 328.9 223 72.2
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 4.3e-87 325.5 263 62.7
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.1e-86 323.2 246 66.3
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.8e-85 320.1 229 66.4
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 4.1e-82 308.9 239 64.4
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 2.0e-81 306.6 293 57.0
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 7.8e-81 304.7 260 62.7
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 5.0e-80 302.0 284 54.6
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 6.6e-80 301.6 238 61.3
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 1.1e-77 294.3 288 54.5
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 5.2e-77 292.0 288 54.2
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 5.8e-76 288.5 176 77.3
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 6.4e-75 285.0 238 64.7
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 8.3e-75 284.6 264 54.2
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 7.0e-74 281.6 284 53.9
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 7.0e-74 281.6 247 59.5
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 1.2e-73 280.8 173 77.5
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.7e-72 276.9 170 75.9
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.6e-70 270.4 171 74.3
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.1e-69 267.7 168 78.0
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 7.5e-68 261.5 215 58.1
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 2.5e-63 246.5 167 69.5
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.1e-57 226.9 176 65.3
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 6.2e-54 215.3 137 70.8
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.4e-53 214.2 132 76.5
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.8e-51 206.1 198 58.6
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.9e-50 203.8 274 43.1
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 7.3e-47 191.8 134 66.4
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.8e-46 189.9 137 64.2
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 4.8e-46 189.1 219 46.6
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 7.6e-44 181.8 244 48.0
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 2.2e-43 180.3 200 54.5
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 7.1e-42 175.3 134 65.7
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.5e-31 140.2 90 68.9
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 8.4e-27 125.2 131 53.4
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 8.2e-22 108.6 91 60.4
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 5.3e-21 105.9 134 49.3
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-19 99.4 128 46.9
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.1e-17 92.4 80 56.2
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 2.4e-13 80.5 119 37.0
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 5.9e-12 75.9 86 47.7
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 8.5e-11 72.0 41 68.3
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 5.1e-08 62.8 41 70.7
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 2.0e-07 60.8 87 35.6
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 8.2e-06 55.5 180 26.1


User provided reference genes

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