Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 9.3e-119 430.3 223 100.0
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 4.7e-70 268.5 222 60.8
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.4e-69 266.9 216 63.4
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 3.0e-69 265.8 216 62.5
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 5.2e-69 265.0 216 62.0
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.5e-68 263.5 216 62.0
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 3.4e-68 262.3 216 59.7
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 5.7e-68 261.5 218 60.1
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 4.9e-67 258.5 223 59.2
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 8.3e-67 257.7 217 59.9
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.4e-66 256.9 217 59.0
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.4e-66 256.9 217 59.0
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.8e-66 256.5 220 57.3
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 1.8e-66 256.5 216 59.3
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.8e-66 256.5 222 58.6
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 2.4e-66 256.1 217 59.0
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 3.2e-66 255.8 222 56.8
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.1e-66 255.4 218 58.7
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 5.4e-66 255.0 210 61.9
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 7.0e-66 254.6 217 59.0
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.2e-65 253.8 220 56.8
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 2.0e-65 253.1 216 58.8
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 2.7e-65 252.7 227 55.5
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.7e-65 252.7 215 58.1
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 3.5e-65 252.3 213 61.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 3.5e-65 252.3 227 55.5
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 4.6e-65 251.9 213 59.6
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 5.9e-65 251.5 220 56.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 7.8e-65 251.1 215 57.7
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 7.8e-65 251.1 211 60.2
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 1.0e-64 250.8 210 58.1
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.3e-64 250.4 216 56.9
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.3e-64 250.4 216 59.7
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.3e-64 250.4 216 59.3
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 1.7e-64 250.0 213 60.6
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.7e-64 250.0 215 57.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.7e-64 250.0 210 58.6
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.7e-64 250.0 217 59.9
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 2.3e-64 249.6 215 57.7
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 3.0e-64 249.2 230 54.3
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 3.0e-64 249.2 195 62.6
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.0e-64 249.2 216 58.8
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.0e-64 249.2 216 58.8
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.0e-64 249.2 216 58.8
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 3.9e-64 248.8 229 55.0
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 3.9e-64 248.8 219 58.4
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 3.9e-64 248.8 216 57.4
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 5.0e-64 248.4 216 57.4
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 6.6e-64 248.1 210 60.5
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 6.6e-64 248.1 217 56.2
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.5e-63 246.9 210 59.0
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.5e-63 246.9 214 57.5
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.5e-63 246.1 216 57.9
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.5e-63 246.1 216 56.5
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 3.3e-63 245.7 217 57.6
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.3e-63 245.7 228 54.8
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 3.3e-63 245.7 228 54.8
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.3e-63 245.7 228 54.8
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.3e-63 245.7 226 55.3
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.3e-63 245.7 226 55.3
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 5.6e-63 245.0 212 58.0
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 7.3e-63 244.6 215 59.1
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 9.5e-63 244.2 212 56.6
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 9.5e-63 244.2 217 57.1
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 9.5e-63 244.2 216 58.3
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.2e-62 243.8 212 58.5
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 3.6e-62 242.3 225 55.1
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 3.6e-62 242.3 215 57.7
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 3.6e-62 242.3 216 57.4
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 3.6e-62 242.3 212 59.0
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 6.2e-62 241.5 217 56.7
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 6.2e-62 241.5 226 54.0
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 1.0e-61 240.7 217 56.7
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.0e-61 240.7 216 55.1
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.0e-61 240.7 217 57.1
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.0e-61 240.7 239 53.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.4e-61 240.4 226 52.2
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.8e-61 240.0 216 56.0
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 5.2e-61 238.4 210 58.1
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 8.9e-61 237.7 209 58.9
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 8.9e-61 237.7 217 56.7
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 2.0e-60 236.5 226 54.4
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.6e-60 236.1 208 56.2
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.4e-60 235.3 191 60.2
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.1e-58 230.7 215 55.8
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.9e-58 229.9 215 56.3
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 9.2e-58 227.6 209 57.4
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.6e-57 226.9 190 60.0
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 3.5e-57 225.7 217 54.8
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 4.6e-57 225.3 235 51.1
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.3e-56 223.0 235 50.6
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.0e-53 212.2 216 50.0
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.6e-49 200.3 223 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 6.8e-45 184.9 211 43.1
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 2.1e-41 173.3 219 41.1
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.1e-39 167.5 222 40.5
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.5e-39 167.2 161 52.8
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 8.4e-35 151.4 189 40.7
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.9e-34 150.2 155 51.0
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 1.6e-33 147.1 158 50.6
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.5e-31 140.6 144 52.8
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 2.1e-30 136.7 120 56.7
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 8.1e-30 134.8 123 53.7
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.4e-29 133.3 120 55.8
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 9.0e-29 131.3 144 47.2
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.5e-28 130.6 120 55.8
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 5.8e-28 128.6 74 78.4
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 9.9e-28 127.9 92 65.2
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.7e-27 127.1 122 51.6
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-25 120.9 74 75.7
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-25 120.9 74 75.7
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.9e-19 99.0 134 41.0
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 2.7e-09 66.6 148 29.7
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 3.0e-08 63.2 82 42.7
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 6.7e-08 62.0 79 40.5
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 3.3e-07 59.7 45 57.8


User provided reference genes

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