Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.1e-284 982.6 514 100.0
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 3.2e-186 655.6 516 66.1
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 7.3e-183 644.4 512 65.6
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 4.4e-180 635.2 514 63.6
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.7e-179 633.3 511 64.4
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 8.3e-179 630.9 510 64.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.1e-178 630.6 512 63.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.3e-176 623.6 514 63.8
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.9e-175 619.8 514 62.3
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.3e-175 619.0 474 67.7
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.6e-174 615.5 512 61.1
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.6e-174 615.5 514 63.2
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.6e-174 615.5 474 67.3
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.6e-174 615.5 511 62.4
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.2e-171 606.3 512 61.7
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.2e-171 606.3 514 61.7
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.2e-171 606.3 515 62.9
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 6.4e-171 604.7 509 61.5
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 2.1e-169 599.7 520 62.3
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 4.3e-167 592.0 513 59.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 7.3e-167 591.3 515 60.0
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.6e-166 589.0 516 59.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 5.2e-165 585.1 515 60.0
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 4.4e-164 582.0 514 60.1
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 4.4e-164 582.0 513 59.3
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 7.6e-164 581.3 513 59.5
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.9e-163 579.3 512 58.0
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.9e-163 579.3 515 59.0
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 3.9e-160 568.9 513 59.5
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 6.6e-160 568.2 513 57.5
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.6e-160 568.2 514 57.2
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 6.6e-160 568.2 507 57.8
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.5e-159 567.0 512 57.2
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.9e-159 566.6 513 58.5
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.9e-159 566.6 510 57.3
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.3e-159 565.8 542 57.9
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 5.6e-159 565.1 519 58.2
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 7.3e-159 564.7 520 58.8
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.3e-159 564.7 514 57.2
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.2e-158 563.9 514 57.0
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 2.1e-158 563.1 512 57.6
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.7e-158 562.0 512 59.2
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.1e-157 560.8 516 56.6
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-157 560.5 514 56.8
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.4e-157 560.5 519 57.4
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 5.2e-157 558.5 514 58.8
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 6.8e-157 558.1 509 57.0
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 8.9e-157 557.8 505 57.4
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.0e-156 556.6 469 62.9
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.6e-156 556.2 507 57.2
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.6e-156 556.2 509 58.0
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.6e-156 556.2 514 56.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.6e-156 556.2 515 58.4
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 4.4e-156 555.4 509 58.0
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 4.4e-156 555.4 509 58.0
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 7.6e-156 554.7 507 56.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.9e-155 552.7 505 57.0
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.9e-155 552.0 512 58.2
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.9e-155 552.0 513 55.8
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.1e-154 550.8 530 57.4
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.4e-154 549.7 515 56.9
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 2.7e-153 546.2 554 54.2
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.7e-152 543.5 506 57.1
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.3e-152 543.1 507 56.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 3.9e-152 542.3 520 56.5
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 3.9e-152 542.3 518 53.7
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 5.1e-152 542.0 507 57.2
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.5e-151 539.7 462 63.2
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.8e-149 533.5 504 55.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.5e-148 530.4 512 56.8
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.4e-148 529.3 499 54.9
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 9.9e-148 527.7 512 53.5
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 5.4e-146 521.9 512 55.5
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 5.4e-146 521.9 512 55.3
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.4e-146 521.9 473 58.1
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 9.3e-146 521.2 514 54.9
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.2e-145 520.8 515 54.6
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.7e-145 519.6 497 55.1
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 2.3e-144 516.5 513 54.6
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 3.0e-144 516.2 536 53.0
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.2e-140 504.2 504 54.4
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 9.9e-140 501.1 538 52.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.1e-138 495.0 395 65.1
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.6e-137 493.8 395 64.8
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.6e-134 483.8 515 53.0
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.8e-133 480.3 514 49.2
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 4.5e-132 475.7 512 52.0
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 7.1e-130 468.4 511 52.3
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.3e-128 463.4 510 50.8
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 5.1e-128 462.2 483 54.0
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.9e-127 460.3 514 49.2
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-126 457.2 490 55.1
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.7e-123 447.2 392 58.2
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.5e-122 443.4 409 56.2
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 1.9e-119 433.7 514 48.1
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 9.0e-117 424.9 477 49.9
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.4e-114 417.5 514 47.5
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.5e-108 397.5 330 64.5
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 3.6e-105 386.3 510 45.1
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 7.2e-74 282.3 388 46.9
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.2e-73 281.6 254 57.9
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 4.7e-73 279.6 378 45.8
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 8.9e-72 275.4 499 38.7
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 8.9e-72 275.4 499 38.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.3e-67 261.5 261 54.0
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 3.4e-63 246.9 513 35.7
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 3.2e-61 240.4 507 31.6
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 4.0e-56 223.4 265 48.7
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.2e-52 211.8 220 52.7
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.6e-52 211.5 520 29.0
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 4.3e-50 203.4 255 46.7
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 3.6e-49 200.3 255 46.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.4e-45 188.3 498 28.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 7.8e-44 182.6 395 32.2
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.4e-39 167.2 130 70.0
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-36 158.7 142 58.5
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 5.6e-34 149.8 164 48.8
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 5.6e-34 149.8 150 53.3
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.3e-33 148.7 142 57.0
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-30 138.7 166 41.0
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.6e-23 114.4 279 34.1
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 3.8e-22 110.5 324 28.7
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 7.1e-21 106.3 116 46.6
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.1e-20 104.8 235 37.9
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-19 102.1 111 45.9
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.3e-19 102.1 123 50.4
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-18 98.6 106 47.2
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 3.3e-18 97.4 119 42.9
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 8.1e-17 92.8 88 52.3
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.3e-14 85.5 82 53.7
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.7e-14 85.1 80 52.5
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.8e-14 84.0 149 37.6
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 9.3e-13 79.3 265 25.3
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 3.5e-12 77.4 73 58.9
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.9e-10 71.6 69 52.2
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.1e-09 68.2 82 43.9
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 9.0e-08 62.8 72 41.7
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 7.6e-07 59.7 88 42.0
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.3e-06 58.9 47 59.6
AUR62042108 Chenopodium quinoa HOM05D000216 ORTHO05D000634 6.5e-06 56.6 38 78.9


User provided reference genes

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