Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 1.1e-47 193.7 167 100.0
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 1.1e-18 97.4 67 79.1
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 2.4e-18 96.3 67 80.6
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 2.4e-18 96.3 67 76.1
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 4.1e-18 95.5 66 80.3
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.2e-17 94.0 65 76.9
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.6e-17 93.6 67 71.6
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.6e-17 93.6 67 71.6
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 3.5e-17 92.4 66 75.8
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 4.5e-17 92.0 65 75.4
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 7.7e-17 91.3 65 75.4
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 7.7e-17 91.3 65 75.4
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 7.7e-17 91.3 65 73.8
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 1.0e-16 90.9 67 76.1
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.0e-16 90.9 67 73.1
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.0e-16 90.9 65 73.8
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 1.3e-16 90.5 66 74.2
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 1.3e-16 90.5 65 73.8
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.3e-16 90.5 65 72.3
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.3e-16 90.5 65 72.3
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 1.7e-16 90.1 65 70.8
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.2e-16 89.7 65 70.8
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 2.2e-16 89.7 65 70.8
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 2.2e-16 89.7 65 73.8
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 2.9e-16 89.4 65 72.3
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 5.0e-16 88.6 69 71.0
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 5.0e-16 88.6 65 70.8
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 5.0e-16 88.6 67 71.6
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 6.5e-16 88.2 65 73.8
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 8.5e-16 87.8 67 67.2
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 1.1e-15 87.4 65 69.2
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.9e-15 86.7 65 73.8
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.9e-15 86.7 67 71.6
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 3.2e-15 85.9 67 70.1
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 4.2e-15 85.5 59 78.0
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 4.2e-15 85.5 59 78.0
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 5.5e-15 85.1 65 75.4
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 5.5e-15 85.1 65 72.3
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 1.2e-14 84.0 65 70.8
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.2e-14 84.0 64 70.3
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 1.2e-14 84.0 64 71.9
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 1.6e-14 83.6 67 68.7
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.6e-14 83.6 59 74.6
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 2.1e-14 83.2 60 68.3
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 2.7e-14 82.8 59 76.3
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 3.6e-14 82.4 63 69.8
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 3.6e-14 82.4 59 78.0
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 4.7e-14 82.0 65 70.8
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.7e-14 82.0 59 76.3
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 4.7e-14 82.0 59 76.3
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 6.1e-14 81.6 65 69.2
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 8.0e-14 81.3 65 69.2
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 8.0e-14 81.3 59 76.3
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 1.0e-13 80.9 65 70.8
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.8e-13 80.1 68 67.6
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.8e-13 80.1 68 67.6
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 1.8e-13 80.1 65 70.8
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.8e-13 80.1 65 70.8
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 2.3e-13 79.7 67 64.2
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 2.3e-13 79.7 65 70.8
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 3.0e-13 79.3 69 69.6
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 3.0e-13 79.3 66 65.2
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 5.2e-13 78.6 69 71.0
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 5.2e-13 78.6 69 71.0
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 5.2e-13 78.6 65 69.2
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 6.7e-13 78.2 65 67.7
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.2e-12 77.4 69 69.6
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 1.2e-12 77.4 63 73.0
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.2e-12 77.4 63 73.0
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.0e-12 76.6 69 66.7
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 9.7e-12 74.3 68 69.1
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 1.3e-11 73.9 48 70.8
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.3e-11 73.9 59 74.6
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 1.7e-11 73.6 59 69.5
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 2.2e-11 73.2 48 70.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 2.2e-11 73.2 59 69.5
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 4.8e-11 72.0 67 59.7
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.4e-10 70.5 44 70.5
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.1e-10 68.9 59 72.9
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 9.1e-10 67.8 59 71.2
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 9.1e-10 67.8 59 71.2
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 9.1e-10 67.8 59 71.2
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 4.5e-09 65.5 45 75.6
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 2.9e-08 62.8 64 54.7
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 6.5e-08 61.6 66 57.6
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 7.2e-07 58.2 32 78.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 7.2e-07 58.2 32 78.1
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 2.7e-06 56.2 61 54.1
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 3.6e-06 55.8 66 51.5
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 8.0e-06 54.7 46 63.0


User provided reference genes

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