Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 2.1e-264 915.6 627 100.0
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.0e-33 148.3 168 55.4
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 2.0e-33 148.3 168 55.4
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.6e-33 147.9 168 55.4
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 4.9e-32 143.7 181 51.4
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 6.4e-32 143.3 172 52.9
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 1.9e-31 141.7 154 59.1
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 2.4e-31 141.4 166 54.8
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 5.4e-31 140.2 175 52.6
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.4e-31 140.2 160 57.5
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 7.1e-31 139.8 188 51.1
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.2e-30 139.0 161 56.5
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 5.1e-29 133.7 182 48.4
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 6.6e-29 133.3 172 49.4
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 8.7e-29 132.9 148 57.4
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 8.7e-29 132.9 148 57.4
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 1.5e-28 132.1 172 52.9
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.3e-27 129.0 152 57.2
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.6e-27 128.6 132 59.8
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.6e-27 128.6 145 55.9
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.1e-27 128.3 153 53.6
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.1e-27 128.3 171 50.9
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.6e-27 127.5 148 55.4
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.8e-26 125.2 182 45.6
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 2.4e-26 124.8 132 57.6
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 3.1e-26 124.4 168 53.0
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 6.9e-26 123.2 160 51.9
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 1.2e-25 122.5 174 50.6
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 2.6e-25 121.3 126 57.1
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 2.6e-25 121.3 141 55.3
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 9.9e-25 119.4 186 44.6
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 9.9e-25 119.4 167 50.3
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.7e-24 118.6 158 50.6
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 3.8e-24 117.5 141 53.9
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 3.8e-24 117.5 147 49.7
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 6.4e-24 116.7 150 52.7
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 8.4e-24 116.3 165 47.9
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 8.4e-24 116.3 145 52.4
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 1.1e-23 115.9 161 49.1
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 1.1e-23 115.9 143 53.8
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 1.4e-23 115.5 149 51.0
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 1.9e-23 115.2 142 52.1
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 2.4e-23 114.8 143 51.7
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 2.4e-23 114.8 165 47.9
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 5.4e-23 113.6 178 45.5
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 5.4e-23 113.6 150 52.7
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 7.1e-23 113.2 173 50.3
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 9.3e-23 112.8 143 50.3
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.7e-22 111.3 164 43.3
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 4.6e-22 110.5 150 48.0
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 1.3e-21 109.0 163 46.0
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.3e-21 109.0 169 48.5
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 1.3e-21 109.0 165 49.7
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.8e-21 108.6 185 43.8
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 3.9e-21 107.5 156 45.5
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 5.1e-21 107.1 175 44.6
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 6.7e-21 106.7 158 43.0
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 3.3e-20 104.4 138 53.6
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 1.3e-19 102.4 195 42.1
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 1.1e-18 99.4 154 46.1
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.8e-18 98.6 131 49.6
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 2.4e-18 98.2 165 45.5
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 3.1e-18 97.8 168 45.8
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 4.5e-17 94.0 134 47.8
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 5.8e-17 93.6 165 39.4
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 9.9e-17 92.8 165 43.0
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 5.5e-15 87.0 171 40.9
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 5.5e-15 87.0 135 45.9
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 2.7e-14 84.7 138 46.4
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 4.6e-14 84.0 138 46.4
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 3.0e-13 81.3 131 44.3
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 3.0e-13 81.3 131 44.3
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 3.9e-13 80.9 138 42.8
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 3.9e-13 80.9 143 46.9
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 1.5e-12 79.0 148 39.9
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.9e-12 78.6 161 41.6
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 3.3e-12 77.8 95 58.9
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 5.6e-12 77.0 139 44.6
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.6e-11 75.5 108 48.1
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 2.1e-11 75.1 167 38.3
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 1.4e-10 72.4 98 49.0
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 3.1e-10 71.2 146 36.3
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 5.3e-10 70.5 129 47.3
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 6.9e-10 70.1 101 45.5
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 2.6e-09 68.2 128 37.5
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 2.6e-09 68.2 128 37.5
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.7e-08 65.5 98 50.0
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 2.2e-08 65.1 153 37.9
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 6.5e-08 63.5 168 34.5
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.7e-06 58.2 143 35.7
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 7.9e-06 56.6 115 41.7


User provided reference genes

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