Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 4.7e-32 141.0 93 100.0
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 4.6e-11 71.2 91 63.7
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 1.7e-10 69.3 65 69.2
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 8.7e-10 67.0 87 62.1
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 3.3e-09 65.1 61 63.9
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 3.3e-09 65.1 56 58.9
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 5.6e-09 64.3 66 63.6
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 2.1e-08 62.4 93 58.1
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.1e-08 62.4 56 55.4
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 2.8e-08 62.0 61 72.1
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 2.8e-08 62.0 89 44.9
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 4.8e-08 61.2 64 62.5
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 4.8e-08 61.2 93 51.6
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 6.2e-08 60.8 48 66.7
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 8.1e-08 60.5 53 62.3
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.1e-07 60.1 57 59.6
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.1e-07 60.1 57 75.4
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 1.4e-07 59.7 60 63.3
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.4e-07 59.7 93 58.1
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 1.8e-07 59.3 91 53.8
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 3.1e-07 58.5 87 54.0
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 4.0e-07 58.2 54 55.6
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 4.0e-07 58.2 57 57.9
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 4.0e-07 58.2 57 59.6
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 4.0e-07 58.2 85 56.5
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 5.3e-07 57.8 58 60.3
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 5.3e-07 57.8 47 66.0
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 9.0e-07 57.0 91 61.5
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 9.0e-07 57.0 91 61.5
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 9.0e-07 57.0 44 68.2
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 1.2e-06 56.6 60 75.0
AUR62042085 Chenopodium quinoa HOM05D007506 ORTHO05D008409 1.5e-06 56.2 65 58.5
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 1.5e-06 56.2 34 76.5
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 2.0e-06 55.8 64 54.7
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 2.0e-06 55.8 81 60.5
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 2.6e-06 55.5 87 51.7
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 2.6e-06 55.5 57 50.9
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 2.6e-06 55.5 53 58.5
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 2.6e-06 55.5 62 61.3
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 3.4e-06 55.1 44 65.9
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 4.4e-06 54.7 61 55.7
SalBow6G2037 Salvia bowleyana HOM05D007506 ORTHO05D008409 4.4e-06 54.7 53 62.3
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 4.4e-06 54.7 45 66.7
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 5.8e-06 54.3 87 57.5
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 5.8e-06 54.3 58 58.6
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 5.8e-06 54.3 44 63.6
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 5.8e-06 54.3 34 70.6
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 7.6e-06 53.9 44 63.6
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 7.6e-06 53.9 61 62.3
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 7.6e-06 53.9 61 62.3
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 7.6e-06 53.9 88 48.9
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 7.6e-06 53.9 61 62.3
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 9.9e-06 53.5 35 71.4
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 9.9e-06 53.5 35 71.4
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 9.9e-06 53.5 43 74.4


User provided reference genes

Program Settings