Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0001110 Simmondsia chinensis HOM05D007308 ORTHO05D009157 6.1e-100 367.5 182 100.0
Gohir.D13G010000 Gossypium hirsutum HOM05D007308 ORTHO05D009157 3.4e-66 255.4 173 71.1
Gorai.013G010700 Gossypium raimondii HOM05D007308 ORTHO05D009157 5.7e-66 254.6 182 68.7
GSVIVG01034647001 Vitis vinifera HOM05D007308 ORTHO05D009157 7.5e-66 254.2 178 70.8
Ciclev10016517m.g Citrus clementina HOM05D007308 ORTHO05D009157 9.8e-66 253.8 178 71.3
Hma1.2p1_0457F.1_g156910 Hydrangea macrophylla HOM05D007308 ORTHO05D009157 9.8e-66 253.8 169 73.4
Gohir.A13G009300 Gossypium hirsutum HOM05D007308 ORTHO05D009157 1.3e-65 253.4 173 71.1
TWI15G0952 Tripterygium wilfordii HOM05D007308 ORTHO05D009157 2.2e-65 252.7 173 69.4
Aqoxy1G00692 Aquilegia oxysepala HOM05D007308 ORTHO05D009157 2.8e-65 252.3 161 75.8
ECA232G3668 Erigeron canadensis HOM05D007308 ORTHO05D009157 3.7e-65 251.9 177 70.1
vmacro10315 Vaccinium macrocarpon HOM05D007308 ORTHO05D009157 4.9e-65 251.5 178 68.0
Rhsim09G0141500 Rhododendron simsii HOM05D007308 ORTHO05D009157 2.4e-64 249.2 177 68.4
Lalb_Chr02g0150981 Lupinus albus HOM05D007308 ORTHO05D009157 3.1e-64 248.8 178 66.9
Thecc.10G116800 Theobroma cacao HOM05D007308 ORTHO05D009157 3.1e-64 248.8 169 73.4
CSS0004692 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 9.2e-64 247.3 177 67.8
HanXRQChr05g0147281 Helianthus annuus HOM05D007308 ORTHO05D009157 1.2e-63 246.9 173 68.8
Prupe.2G071800 Prunus persica HOM05D007308 ORTHO05D009157 1.2e-63 246.9 178 68.0
TAR623G1715 Trochodendron aralioides HOM05D007308 ORTHO05D009157 1.6e-63 246.5 178 68.5
Dinv08592 Davidia involucrata HOM05D007308 ORTHO05D009157 2.7e-63 245.7 169 70.4
Hund06794 Selenicereus undatus HOM05D007308 ORTHO05D009157 2.7e-63 245.7 178 69.1
Nn2g14273 Nelumbo nucifera HOM05D007308 ORTHO05D009157 4.5e-63 245.0 178 67.4
Duzib106G1839 Durio zibethinus HOM05D007308 ORTHO05D009157 1.0e-62 243.8 169 71.0
Medtr1g090630 Medicago truncatula HOM05D007308 ORTHO05D009157 1.7e-62 243.0 178 66.9
AT5G04830 Arabidopsis thaliana HOM05D007308 ORTHO05D009157 3.8e-62 241.9 182 65.4
ClCG05G021890 Citrullus lanatus HOM05D007308 ORTHO05D009157 3.8e-62 241.9 176 65.9
AL6G14490 Arabidopsis lyrata HOM05D007308 ORTHO05D009157 1.1e-61 240.4 182 64.3
CsaV3_5G035250 Cucumis sativus L. HOM05D007308 ORTHO05D009157 1.1e-61 240.4 176 66.5
Lsat_1_v5_gn_3_53161 Lactuca sativa HOM05D007308 ORTHO05D009157 1.1e-61 240.4 159 73.0
Carub.0006s0371 Capsella rubella HOM05D007308 ORTHO05D009157 1.5e-61 240.0 171 66.7
Eucgr.J00279 Eucalyptus grandis HOM05D007308 ORTHO05D009157 2.5e-61 239.2 169 69.2
Glyma.20G194000 Glycine max HOM05D007308 ORTHO05D009157 2.5e-61 239.2 176 66.5
MBI17_g22148_MAGBIO Magnolia biondii HOM05D007308 ORTHO05D009157 2.5e-61 239.2 178 66.9
THA.LOC104816471 Tarenaya hassleriana HOM05D007308 ORTHO05D009157 2.5e-61 239.2 180 65.0
arahy.Tifrunner.gnm1.ann1.ZU0NEU Arachis hypogaea HOM05D007308 ORTHO05D009157 5.6e-61 238.0 173 65.3
QL04p047115 Quercus lobata HOM05D007308 ORTHO05D009157 5.6e-61 238.0 177 67.8
arahy.Tifrunner.gnm1.ann1.I1QH9V Arachis hypogaea HOM05D007308 ORTHO05D009157 9.5e-61 237.3 173 64.7
Potri.010G241700 Populus trichocarpa HOM05D007308 ORTHO05D009157 2.1e-60 236.1 177 65.0
Lj3C924T9 Lonicera japonica HOM05D007308 ORTHO05D009157 2.8e-60 235.7 202 61.4
Lj5g0023307 Lotus japonicus HOM05D007308 ORTHO05D009157 2.8e-60 235.7 175 66.3
Nitab4.5_0001047g0020 Nicotiana tabacum HOM05D007308 ORTHO05D009157 2.8e-60 235.7 172 67.4
Sp6g38000 Schrenkiella parvula HOM05D007308 ORTHO05D009157 2.8e-60 235.7 171 65.5
MSTRG.27555 Avicennia marina HOM05D007308 ORTHO05D009157 3.6e-60 235.3 160 72.5
Glyma.10G196200 Glycine max HOM05D007308 ORTHO05D009157 3.6e-60 235.3 176 65.9
Sabra10G0189200 Salix brachista HOM05D000139 ORTHO05D000103 6.1e-60 234.6 177 65.0
C03p02230 Brassica napus HOM05D007308 ORTHO05D009157 8.0e-60 234.2 179 63.1
BolC3t12774H Brassica oleracea HOM05D007308 ORTHO05D009157 8.0e-60 234.2 179 63.1
BcaB01g05916 Brassica carinata HOM05D007308 ORTHO05D009157 1.0e-59 233.8 179 63.1
CiPaw.13G043100 Carya illinoinensis HOM05D007308 ORTHO05D009157 1.0e-59 233.8 177 65.5
Peaxi162Scf00725g00524 Petunia axillaris HOM05D007308 ORTHO05D009157 1.4e-59 233.4 158 70.9
MD07G1062000 Malus domestica HOM05D007308 ORTHO05D009157 2.3e-59 232.6 182 63.7
Sabra08G0011300 Salix brachista HOM05D007308 ORTHO05D009157 5.2e-59 231.5 168 69.0
CARHR208450 Cardamine hirsuta HOM05D007308 ORTHO05D009157 6.8e-59 231.1 179 63.7
Phvul.007G138800 Phaseolus vulgaris HOM05D007308 ORTHO05D009157 6.8e-59 231.1 169 67.5
BcaC06g32190 Brassica carinata HOM05D007308 ORTHO05D009157 8.9e-59 230.7 180 62.8
PGR044G1814 Punica granatum HOM05D007308 ORTHO05D009157 8.9e-59 230.7 155 69.0
Sed0004755 Sechium edule HOM05D007308 ORTHO05D009157 8.9e-59 230.7 172 64.5
VMungo0720G2616 Vigna mungo HOM05D007308 ORTHO05D009157 8.9e-59 230.7 178 64.0
C09p72050 Brassica napus HOM05D007308 ORTHO05D009157 1.2e-58 230.3 180 62.8
CANSAT56G1109 Cannabis sativa HOM05D007308 ORTHO05D009157 1.2e-58 230.3 178 64.6
Thhalv10014751m.g Eutrema salsugineum HOM05D007308 ORTHO05D009157 1.2e-58 230.3 171 64.9
Aa31LG11G5650 Aethionema arabicum HOM05D007308 ORTHO05D009157 1.5e-58 229.9 180 61.1
Cc02_g09470 Coffea canephora HOM05D007308 ORTHO05D009157 1.5e-58 229.9 177 63.3
A03p01870 Brassica napus HOM05D007308 ORTHO05D009157 2.0e-58 229.6 179 62.0
A10p31380 Brassica napus HOM05D007308 ORTHO05D009157 2.0e-58 229.6 180 62.8
BraA03t09557Z Brassica rapa HOM05D007308 ORTHO05D009157 2.0e-58 229.6 179 62.0
Os01g0965900 Oryza sativa ssp. japonica HOM05D007308 ORTHO05D009157 2.6e-58 229.2 160 68.1
Migut.F00856 Erythranthe guttata HOM05D007308 ORTHO05D009157 3.4e-58 228.8 169 66.9
Lalb_Chr21g0312841 Lupinus albus HOM05D007308 ORTHO05D009157 5.7e-58 228.0 153 70.6
HPP92_005473 Vanilla planifolia HOM05D007308 ORTHO05D009157 5.7e-58 228.0 165 65.5
SalBow3G3836 Salvia bowleyana HOM05D007308 ORTHO05D009157 9.8e-58 227.3 160 68.1
Sed0002245 Sechium edule HOM05D007308 ORTHO05D009157 1.7e-57 226.5 176 62.5
PGSC0003DMG400001980 Solanum tuberosum HOM05D007308 ORTHO05D009157 2.9e-57 225.7 164 66.5
unitig_32.g11899 Utricularia gibba HOM05D007308 ORTHO05D009157 4.9e-57 224.9 170 61.8
CDE02G0914 Ceratophyllum demersum HOM05D007308 ORTHO05D009157 6.4e-57 224.6 161 66.5
PSO339G2601 Papaver somniferum HOM05D007308 ORTHO05D009157 8.3e-57 224.2 160 65.6
BolC9t59950H Brassica oleracea HOM05D007308 ORTHO05D009157 1.4e-56 223.4 188 60.1
PSO384G3587 Papaver somniferum HOM05D007308 ORTHO05D009157 2.4e-56 222.6 161 65.2
Zm00001eb362380 Zea mays HOM05D007308 ORTHO05D009157 2.4e-56 222.6 154 65.6
BraA10t45184Z Brassica rapa HOM05D007308 ORTHO05D009157 3.2e-56 222.2 188 60.1
PGR044G1810 Punica granatum HOM05D007308 ORTHO05D009157 7.0e-56 221.1 178 58.4
SGA_v2.0_scaffold272G46352 Striga asiatica HOM05D007308 ORTHO05D009157 1.2e-52 210.3 243 50.6
ATR0772G202 Amborella trichopoda HOM05D007308 ORTHO05D009157 3.6e-52 208.8 161 62.1
Haze_03470 Corylus avellana HOM05D007308 ORTHO05D009157 3.6e-52 208.8 186 59.7
CSS0017788 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 1.8e-51 206.5 173 60.7
Solyc11g006505.1 Solanum lycopersicum HOM05D007308 ORTHO05D009157 3.7e-49 198.7 134 70.1
Sopen11g002410 Solanum pennellii HOM05D007308 ORTHO05D009157 4.9e-49 198.4 134 69.4
AagrBONN_evm.TU.Sc2ySwM_344.2550 Anthoceros agrestis HOM05D007308 ORTHO05D009157 1.2e-47 193.7 154 60.4
Pp3c14_20980 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.6e-47 193.4 168 56.0
Pp3c19_15880 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.6e-47 193.4 158 55.1
SEGI_14438 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 2.0e-47 193.0 167 56.3
Mapoly0021s0141 Marchantia polymorpha HOM05D007308 ORTHO05D009157 1.0e-46 190.7 168 56.0
MELO3C012339.2 Cucumis melo HOM05D007308 ORTHO05D009157 2.3e-46 189.5 141 64.5
SEGI_29808 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 8.6e-46 187.6 149 63.1
Actinidia34730 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.3e-45 185.3 135 68.9
SMO143G0271 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 7.3e-45 184.5 155 60.0
RcHm_v2.0_Chr1g0331851 Rosa chinensis HOM05D007308 ORTHO05D009157 8.9e-43 177.6 135 66.7
CiPaw.14G034600 Carya illinoinensis HOM05D007308 ORTHO05D009157 5.8e-42 174.9 174 52.3
Manes.10G060700 Manihot esculenta HOM05D007308 ORTHO05D009157 2.9e-41 172.6 120 68.3
SMO265G0003 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 7.1e-40 167.9 155 56.8
Pp3c1_28520 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.6e-34 149.4 119 59.7
BcaNung05151 Brassica carinata HOM05D007308 ORTHO05D009157 2.7e-31 139.4 193 44.0
Potri.008G017701 Populus trichocarpa HOM05D007308 ORTHO05D009157 7.1e-24 114.8 80 67.5
Atru.BG.262.p Acer truncatum HOM05D007308 ORTHO05D009157 1.2e-23 114.0 80 70.0
CBR_g30213 Chara braunii HOM05D007308 ORTHO05D009157 4.8e-20 102.1 146 39.0
Pp3c2_31450 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.8e-19 100.1 114 46.5
Actinidia27055 Actinidia chinensis HOM05D007308 ORTHO05D009157 1.8e-11 73.6 90 51.1
PGSC0003DMG400007605 Solanum tuberosum HOM05D000011 ORTHO05D000018 2.2e-09 66.6 42 64.3
Sopen11g002430 Solanum pennellii HOM05D000011 ORTHO05D000018 3.2e-08 62.8 54 50.0
PGSC0003DMG402001979 Solanum tuberosum HOM05D000011 ORTHO05D000018 3.0e-06 56.2 43 55.8


User provided reference genes

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