Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 4.3e-71 271.2 132 100.0
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 2.3e-16 89.4 48 81.2
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 3.9e-16 88.6 45 88.9
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 8.8e-16 87.4 73 57.5
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 8.8e-16 87.4 73 57.5
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.5e-15 86.7 41 95.1
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 1.5e-15 86.7 41 95.1
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 2.0e-15 86.3 41 92.7
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 3.3e-15 85.5 78 55.1
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 3.3e-15 85.5 41 90.2
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 4.4e-15 85.1 41 90.2
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 4.4e-15 85.1 61 60.7
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 5.7e-15 84.7 88 52.3
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 5.7e-15 84.7 41 90.2
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 7.4e-15 84.3 58 63.8
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 7.4e-15 84.3 58 63.8
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.7e-15 84.0 41 90.2
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.7e-15 84.0 41 90.2
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 9.7e-15 84.0 41 90.2
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.7e-15 84.0 41 90.2
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 9.7e-15 84.0 41 90.2
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 1.3e-14 83.6 58 63.8
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.3e-14 83.6 41 87.8
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.3e-14 83.6 43 86.0
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 1.3e-14 83.6 41 87.8
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 1.7e-14 83.2 41 87.8
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 2.2e-14 82.8 41 85.4
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.8e-14 82.4 41 87.8
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.8e-14 82.4 41 90.2
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.8e-14 82.4 41 87.8
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 2.8e-14 82.4 41 87.8
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 2.8e-14 82.4 45 82.2
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 2.8e-14 82.4 41 87.8
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 3.7e-14 82.0 41 87.8
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 3.7e-14 82.0 41 90.2
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 3.7e-14 82.0 41 87.8
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 3.7e-14 82.0 41 85.4
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 3.7e-14 82.0 41 85.4
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 4.8e-14 81.6 61 59.0
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 4.8e-14 81.6 41 87.8
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 6.3e-14 81.3 41 82.9
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 6.3e-14 81.3 41 82.9
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 6.3e-14 81.3 41 90.2
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 6.3e-14 81.3 41 82.9
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 8.2e-14 80.9 41 85.4
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 8.2e-14 80.9 41 82.9
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 8.2e-14 80.9 41 85.4
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 1.1e-13 80.5 41 85.4
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 1.1e-13 80.5 61 57.4
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.1e-13 80.5 61 59.0
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 1.1e-13 80.5 41 87.8
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 1.1e-13 80.5 41 85.4
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 1.4e-13 80.1 58 62.1
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 1.4e-13 80.1 41 85.4
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 1.4e-13 80.1 41 85.4
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 1.4e-13 80.1 41 80.5
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 1.8e-13 79.7 41 80.5
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 1.8e-13 79.7 41 80.5
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 1.8e-13 79.7 41 82.9
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 1.8e-13 79.7 41 85.4
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 2.4e-13 79.3 41 82.9
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 2.4e-13 79.3 41 82.9
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 2.4e-13 79.3 41 82.9
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 3.1e-13 79.0 41 82.9
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 3.1e-13 79.0 73 54.8
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 3.1e-13 79.0 41 82.9
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 3.1e-13 79.0 41 85.4
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 4.1e-13 78.6 41 80.5
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 4.1e-13 78.6 41 82.9
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 5.3e-13 78.2 41 78.0
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 5.3e-13 78.2 41 82.9
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 5.3e-13 78.2 41 80.5
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 5.3e-13 78.2 41 78.0
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 9.1e-13 77.4 41 80.5
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.6e-12 76.6 40 82.5
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.6e-12 76.6 41 80.5
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.6e-12 76.6 41 82.9
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 2.0e-12 76.3 41 78.0
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 4.5e-12 75.1 41 73.2
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 4.5e-12 75.1 39 84.6
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 4.5e-12 75.1 41 78.0
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 4.5e-12 75.1 41 78.0
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 5.9e-12 74.7 41 75.6
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 1.0e-11 73.9 41 75.6
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 2.2e-11 72.8 41 73.2
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 6.5e-11 71.2 44 70.5
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 1.5e-10 70.1 34 91.2
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 5.5e-10 68.2 40 77.5
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 4.7e-09 65.1 34 85.3
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 1.8e-08 63.2 34 76.5
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.2e-07 60.5 53 60.4


User provided reference genes

Program Settings