Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0008040 Simmondsia chinensis HOM05D000070 ORTHO05D007358 7.3e-78 293.9 156 100.0
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 3.8e-34 148.7 151 58.3
Hund19077 Selenicereus undatus HOM05D000070 ORTHO05D007358 8.5e-34 147.5 161 55.3
Manes.08G062100 Manihot esculenta HOM05D000070 ORTHO05D007358 3.2e-33 145.6 153 54.9
Thecc.03G306800 Theobroma cacao HOM05D000070 ORTHO05D007358 7.2e-33 144.4 151 57.0
CSS0017562 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D007358 9.4e-33 144.1 151 57.0
Dinv40077 Davidia involucrata HOM05D000070 ORTHO05D007358 1.2e-32 143.7 151 55.0
Duzib084G0952 Durio zibethinus HOM05D000070 ORTHO05D007358 1.6e-32 143.3 149 56.4
Cpa.g.sc5.153 Carica papaya HOM05D000070 ORTHO05D007358 2.1e-32 142.9 151 53.0
Rhsim07G0200300 Rhododendron simsii HOM05D000070 ORTHO05D007358 4.6e-32 141.7 151 54.3
Dinv20771 Davidia involucrata HOM05D000070 ORTHO05D007358 6.1e-32 141.4 151 54.3
vmacro04768 Vaccinium macrocarpon HOM05D000070 ORTHO05D007358 7.9e-32 141.0 151 53.6
Nn7g36932 Nelumbo nucifera HOM05D000070 ORTHO05D007358 1.8e-31 139.8 157 54.1
TAR636G1288 Trochodendron aralioides HOM05D000070 ORTHO05D007358 3.0e-31 139.0 149 55.0
Ciclev10013654m.g Citrus clementina HOM05D000070 ORTHO05D007358 3.3e-30 135.6 151 51.7
QL07p012633 Quercus lobata HOM05D000070 ORTHO05D007358 1.7e-29 133.3 155 52.3
GSVIVG01025783001 Vitis vinifera HOM05D000070 ORTHO05D007358 3.7e-29 132.1 151 51.7
Gohir.D08G175400 Gossypium hirsutum HOM05D000070 ORTHO05D007358 4.8e-29 131.7 151 53.6
Carub.0005s2343 Capsella rubella HOM05D000070 ORTHO05D007358 1.8e-28 129.8 151 55.0
Potri.006G035000 Populus trichocarpa HOM05D000070 ORTHO05D007358 2.4e-28 129.4 157 52.9
Gorai.004G183300 Gossypium raimondii HOM05D000070 ORTHO05D007358 5.3e-28 128.3 151 52.3
Sabra06G0023400 Salix brachista HOM05D000070 ORTHO05D007358 9.1e-28 127.5 157 51.6
Sp5g05880 Schrenkiella parvula HOM05D000070 ORTHO05D007358 9.1e-28 127.5 151 51.7
Hma1.2p1_1423F.1_g282610 Hydrangea macrophylla HOM05D000070 ORTHO05D007358 1.2e-27 127.1 157 53.5
Gohir.A08G154900 Gossypium hirsutum HOM05D000070 ORTHO05D007358 5.9e-27 124.8 151 52.3
AT3G56690 Arabidopsis thaliana HOM05D000070 ORTHO05D007358 7.7e-27 124.4 154 51.3
Thhalv10005761m.g Eutrema salsugineum HOM05D000070 ORTHO05D007358 1.7e-26 123.2 154 49.4
AL5G38060 Arabidopsis lyrata HOM05D000070 ORTHO05D007358 2.2e-26 122.9 151 51.0
BcaC07g40128 Brassica carinata HOM05D000070 ORTHO05D007358 2.9e-26 122.5 151 51.0
ClCG09G015840 Citrullus lanatus HOM05D000070 ORTHO05D007358 5.0e-26 121.7 151 48.3
BolC8t50809H Brassica oleracea HOM05D000070 ORTHO05D007358 6.5e-26 121.3 153 51.0
CARHR166810 Cardamine hirsuta HOM05D000070 ORTHO05D007358 8.5e-26 120.9 153 51.0
THA.LOC104824382 Tarenaya hassleriana HOM05D000070 ORTHO05D007358 8.5e-26 120.9 152 53.3
BcaC07g39973 Brassica carinata HOM05D000070 ORTHO05D007358 1.1e-25 120.6 153 51.0
Thhalv10006379m.g Eutrema salsugineum HOM05D000070 ORTHO05D007358 7.2e-25 117.9 151 49.0
Prupe.3G062600 Prunus persica HOM05D000070 ORTHO05D007358 1.2e-24 117.1 148 51.4
A09p49520 Brassica napus HOM05D000070 ORTHO05D007358 1.6e-24 116.7 153 49.0
BraA09t40406Z Brassica rapa HOM05D000070 ORTHO05D007358 1.6e-24 116.7 153 49.0
C08p31920 Brassica napus HOM05D000070 ORTHO05D007358 4.7e-24 115.2 151 49.0
Sopen10g028980 Solanum pennellii HOM05D000070 ORTHO05D007358 7.9e-24 114.4 152 50.0
SGA_v2.0_scaffold66G22283 Striga asiatica HOM05D000070 ORTHO05D007358 7.9e-24 114.4 154 46.8
Solyc10g078320.2 Solanum lycopersicum HOM05D000070 ORTHO05D007358 1.0e-23 114.0 152 50.0
Aa31LG10G14780 Aethionema arabicum HOM05D000070 ORTHO05D007358 2.3e-23 112.8 152 48.0
Oeu005223.1 Olea europaea HOM05D000070 ORTHO05D007358 3.9e-23 112.1 161 46.6
Peaxi162Scf00003g05131 Petunia axillaris HOM05D000070 ORTHO05D007358 5.1e-23 111.7 118 54.2
SalBow6G2908 Salvia bowleyana HOM05D000070 ORTHO05D007358 5.1e-23 111.7 156 48.1
MSTRG.6311 Avicennia marina HOM05D000070 ORTHO05D007358 2.0e-22 109.8 150 48.0
EL10Ac3g07273 Beta vulgaris HOM05D000070 ORTHO05D007358 2.0e-22 109.8 154 46.8
Nitab4.5_0000123g0590 Nicotiana tabacum HOM05D000070 ORTHO05D007358 2.6e-22 109.4 153 49.0
CsaV3_7G008770 Cucumis sativus L. HOM05D000070 ORTHO05D007358 4.4e-22 108.6 151 46.4
Nitab4.5_0008332g0030 Nicotiana tabacum HOM05D000070 ORTHO05D007358 7.4e-22 107.8 153 49.7
Aqoxy5G00447 Aquilegia oxysepala HOM05D000070 ORTHO05D007358 1.3e-21 107.1 153 46.4
DCAR_020593 Daucus carota HOM05D000070 ORTHO05D007358 1.3e-21 107.1 154 44.2
FAN09G2492 Fragaria x ananassa HOM05D000070 ORTHO05D007358 2.2e-21 106.3 152 45.4
Cc06_g20150 Coffea canephora HOM05D000070 ORTHO05D007358 2.8e-21 105.9 163 46.0
Migut.J01627 Erythranthe guttata HOM05D000070 ORTHO05D007358 2.8e-21 105.9 158 46.2
FvH4_6g32040 Fragaria vesca HOM05D000070 ORTHO05D007358 2.8e-21 105.9 152 44.7
FAN14G4524 Fragaria x ananassa HOM05D000070 ORTHO05D007358 2.8e-21 105.9 152 44.7
CAN.G960.72 Capsicum annuum HOM05D000070 ORTHO05D007358 3.7e-21 105.5 152 45.4
Eucgr.K01669 Eucalyptus grandis HOM05D000070 ORTHO05D007358 3.7e-21 105.5 161 43.5
MD09G1206200 Malus domestica HOM05D000070 ORTHO05D007358 6.3e-21 104.8 150 46.0
MELO3C018435.2 Cucumis melo HOM05D000070 ORTHO05D007358 8.2e-21 104.4 151 44.4
PGR142G2226 Punica granatum HOM05D000070 ORTHO05D007358 2.4e-20 102.8 155 41.3
Psat3g081080 Pisum sativum HOM05D000070 ORTHO05D007358 3.1e-20 102.4 152 44.7
FAN05G1937 Fragaria x ananassa HOM05D000070 ORTHO05D007358 9.1e-20 100.9 150 43.3
FAN02G0829 Fragaria x ananassa HOM05D000070 ORTHO05D007358 1.2e-19 100.5 152 44.7
Sed0024109 Sechium edule HOM05D000070 ORTHO05D007358 2.0e-19 99.8 154 40.9
Lsat_1_v5_gn_7_62300 Lactuca sativa HOM05D000070 ORTHO05D007358 1.1e-17 94.0 159 45.9
Atru.chr12.1313 Acer truncatum HOM05D000070 ORTHO05D007358 3.2e-17 92.4 153 45.1
Lj1g0022985 Lotus japonicus HOM05D000070 ORTHO05D007358 3.2e-17 92.4 156 42.3
HanXRQChr13g0406801 Helianthus annuus HOM05D000070 ORTHO05D007358 7.2e-17 91.3 159 45.3
Ca_08370_v3 Cicer arietinum L. HOM05D000070 ORTHO05D007358 1.2e-16 90.5 138 45.7
Lalb_Chr14g0365611 Lupinus albus HOM05D000070 ORTHO05D007358 2.7e-16 89.4 153 43.1
Glyma.03G123500 Glycine max HOM05D000070 ORTHO05D007358 1.0e-15 87.4 151 41.7
MBI06_g17222_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D007358 1.0e-15 87.4 156 42.9
arahy.Tifrunner.gnm1.ann1.YU3HKG Arachis hypogaea HOM05D000070 ORTHO05D007358 5.2e-15 85.1 124 44.4
Medtr7g088830 Medicago truncatula HOM05D000070 ORTHO05D007358 8.8e-15 84.3 160 39.4
Phvul.001G119600 Phaseolus vulgaris HOM05D000070 ORTHO05D007358 1.1e-14 84.0 158 43.0
Lj1C1085G1 Lonicera japonica HOM05D000070 ORTHO05D007358 1.5e-14 83.6 88 52.3
Actinidia29575 Actinidia chinensis HOM05D000070 ORTHO05D007358 2.0e-14 83.2 153 39.2
VMungo1383G0846 Vigna mungo HOM05D000070 ORTHO05D007358 2.6e-14 82.8 154 40.9
TPR.G22681 Trifolium pratense HOM05D000070 ORTHO05D007358 4.4e-14 82.0 126 42.1
Medtr7g089040 Medicago truncatula HOM05D000070 ORTHO05D007358 5.7e-14 81.6 155 41.3
unitig_21.g20681 Utricularia gibba HOM05D000070 ORTHO05D007358 7.4e-14 81.3 130 41.5
arahy.Tifrunner.gnm1.ann1.GDL09X Arachis hypogaea HOM05D000070 ORTHO05D007358 1.7e-13 80.1 152 38.8
CDE05G3455 Ceratophyllum demersum HOM05D000070 ORTHO05D007358 2.8e-13 79.3 154 40.9
ATR1096G065 Amborella trichopoda HOM05D000070 ORTHO05D007358 3.7e-13 79.0 157 38.9
Haze_05085 Corylus avellana HOM05D000070 ORTHO05D007358 3.7e-13 79.0 91 50.5
AUR62030281 Chenopodium quinoa HOM05D000070 ORTHO05D007358 6.3e-13 78.2 66 63.6
PSO384G4037 Papaver somniferum HOM05D000070 ORTHO05D007358 1.8e-12 76.6 157 40.1
AUR62018382 Chenopodium quinoa HOM05D000070 ORTHO05D007358 4.1e-12 75.5 66 62.1
Sed0007179 Sechium edule HOM05D000070 ORTHO05D007358 1.2e-11 73.9 112 40.2
CDE07G0994 Ceratophyllum demersum HOM05D000070 ORTHO05D007358 2.0e-11 73.2 108 44.4
PSO339G6190 Papaver somniferum HOM05D000070 ORTHO05D007358 2.0e-11 73.2 156 38.5
ATR0820G242 Amborella trichopoda HOM05D000070 ORTHO05D007358 2.6e-11 72.8 157 39.5
SEGI_06917 Sequoiadendron giganteum HOM05D000070 ORTHO05D007358 1.3e-10 70.5 149 33.6
HPP92_005653 Vanilla planifolia HOM05D000070 ORTHO05D007358 2.2e-10 69.7 157 36.9
Os11g0220400 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D007358 2.9e-10 69.3 158 37.3
Atru.chr12.1645 Acer truncatum HOM05D000070 ORTHO05D007358 5.0e-10 68.6 151 35.1
HPP92_005675 Vanilla planifolia HOM05D000070 ORTHO05D007358 5.0e-10 68.6 157 37.6
AUR62043208 Chenopodium quinoa HOM05D000070 ORTHO05D007358 1.1e-09 67.4 66 57.6
RcHm_v2.0_Chr2g0139701 Rosa chinensis HOM05D000070 ORTHO05D007358 3.6e-08 62.4 66 53.0
Haze_20262 Corylus avellana HOM05D000070 ORTHO05D007358 3.0e-07 59.3 56 51.8
Hma1.2p1_1022F.1_g248720 Hydrangea macrophylla HOM05D000070 ORTHO05D007358 2.6e-06 56.2 155 34.8


User provided reference genes

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