Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.4e-193 679.5 345 100.0
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 2.0e-181 639.0 336 94.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 7.8e-181 637.1 335 94.6
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-179 633.3 336 94.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 91.4
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 2.2e-175 619.0 332 91.9
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.2e-175 619.0 332 92.2
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 2.9e-175 618.6 332 92.2
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 8.3e-175 617.1 333 91.6
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.4e-174 614.4 333 91.6
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 90.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.6e-173 612.8 340 90.9
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.6e-173 611.3 332 90.1
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.0e-173 610.9 332 90.1
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 6.0e-173 610.9 333 91.6
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 6.0e-173 610.9 333 91.6
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 6.0e-173 610.9 332 90.4
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.3e-172 609.8 332 91.0
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.7e-172 609.4 332 90.1
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.3e-172 609.0 332 90.1
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.3e-172 609.0 333 90.7
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.3e-172 609.0 333 90.1
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 3.0e-172 608.6 332 90.1
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.0e-172 608.6 333 90.7
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 3.0e-172 608.6 330 90.6
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 5.1e-172 607.8 333 89.5
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 6.6e-172 607.4 345 87.8
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 8.6e-172 607.1 332 89.8
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 8.6e-172 607.1 332 89.8
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.1e-171 606.7 333 90.1
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.5e-171 606.3 332 90.1
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.5e-171 606.3 332 89.2
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.5e-171 606.3 331 89.4
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 3.3e-171 605.1 334 89.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.3e-171 605.1 332 89.2
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.3e-171 604.7 332 88.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 7.3e-171 604.0 337 87.2
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 7.3e-171 604.0 333 90.1
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.3e-171 604.0 333 90.1
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.2e-170 603.2 332 90.1
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.6e-170 602.8 345 87.0
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.6e-170 602.8 332 88.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.6e-170 602.8 337 88.7
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.6e-170 602.8 333 89.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.1e-170 602.4 345 87.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.8e-170 602.1 332 89.8
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 4.7e-170 601.3 335 88.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.7e-170 601.3 332 88.6
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 4.7e-170 601.3 333 88.3
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.2e-170 600.9 332 88.3
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 6.2e-170 600.9 340 88.2
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 6.2e-170 600.9 332 88.9
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 1.1e-169 600.1 339 87.6
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-169 599.7 333 88.0
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.3e-169 599.0 332 89.2
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.3e-169 599.0 334 88.3
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 5.2e-169 597.8 332 88.6
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 6.8e-169 597.4 332 88.6
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 8.9e-169 597.0 337 87.5
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 8.9e-169 597.0 332 88.3
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.6e-168 595.5 338 87.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 4.4e-168 594.7 332 87.7
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 4.4e-168 594.7 332 87.7
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 4.4e-168 594.7 332 87.7
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 4.4e-168 594.7 338 86.7
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 4.4e-168 594.7 332 88.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.3e-167 593.2 334 88.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-167 593.2 334 88.0
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.3e-167 593.2 332 88.3
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-167 592.4 332 87.0
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.9e-167 592.0 332 87.3
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 2.9e-167 592.0 330 88.2
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.7e-167 591.7 334 87.7
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.9e-166 589.3 336 86.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.4e-166 587.8 335 86.9
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.4e-166 587.8 325 90.2
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.2e-166 587.0 334 86.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.1e-165 585.9 352 84.1
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.7e-165 585.5 338 84.9
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 3.5e-165 585.1 320 90.9
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 4.6e-165 584.7 374 80.2
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.7e-164 582.8 337 84.3
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 3.0e-164 582.0 309 92.2
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 5.1e-164 581.3 332 84.9
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 4.3e-163 578.2 333 84.7
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 9.6e-163 577.0 333 84.4
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 9.6e-163 577.0 333 84.7
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.2e-162 576.6 338 83.7
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-162 575.9 333 84.4
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-162 575.9 333 84.1
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.1e-162 575.9 333 84.4
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.1e-162 575.9 309 90.9
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.8e-162 575.5 333 84.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.8e-162 575.5 337 83.1
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 339 83.5
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 4.7e-162 574.7 338 83.1
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 4.7e-162 574.7 338 83.4
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-161 573.5 338 82.8
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.4e-161 573.2 338 83.1
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.4e-161 572.4 338 83.1
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 4.0e-161 571.6 338 82.8
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 5.2e-161 571.2 338 82.8
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 6.8e-161 570.9 338 82.8
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 6.8e-161 570.9 344 81.4
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 8.9e-161 570.5 338 82.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 8.9e-161 570.5 313 89.8
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.0e-160 569.3 338 82.8
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.0e-160 569.3 338 83.1
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 5.8e-160 567.8 341 81.8
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 9.9e-160 567.0 348 80.7
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.8e-159 565.1 332 85.8
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.9e-158 562.8 342 82.2
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.3e-158 560.5 333 85.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-157 560.1 315 87.9
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 4.6e-157 558.1 313 87.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.0e-156 557.0 347 79.8
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.3e-156 556.6 314 86.3
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.7e-156 556.2 340 78.8
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 2.1e-154 549.3 340 78.8
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.5e-152 541.6 314 84.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 5.8e-152 541.2 332 82.2
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.8e-151 538.5 336 77.4
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.4e-150 536.6 335 77.3
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.4e-150 535.8 336 77.1
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.6e-149 533.1 380 73.7
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.6e-149 531.6 417 69.1
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 7.6e-144 514.2 364 72.8
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.3e-140 503.4 271 91.1
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.8e-138 495.0 332 77.7
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.8e-137 493.0 294 83.0
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 3.4e-136 488.8 320 73.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 3.8e-135 485.3 262 91.2
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.9e-134 483.0 265 90.6
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.9e-134 483.0 265 90.6
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 7.6e-128 461.1 332 72.6
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-127 460.7 345 71.3
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.2e-120 437.2 238 89.1
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 4.5e-120 435.3 341 64.8
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 8.5e-119 431.0 251 86.5
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 2.7e-117 426.0 251 81.3
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 3.3e-115 419.1 324 62.0
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 5.2e-108 395.2 216 88.4
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.3e-106 390.6 247 76.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 5.5e-102 375.2 325 56.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.2e-101 374.0 328 58.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 4.3e-54 216.1 132 82.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.0e-44 183.0 164 60.4
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.7e-34 151.0 180 53.3
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.7e-29 133.3 79 79.7
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 4.0e-28 129.8 79 78.5
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 9.9e-27 125.2 74 83.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.8e-26 123.2 72 81.9
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.4e-19 100.1 108 53.7
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.7e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.4e-12 78.2 61 68.9
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.0e-11 74.3 41 80.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 3.4e-11 73.6 57 68.4
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.8e-10 70.1 100 44.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 7.2e-09 65.9 60 58.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 7.2e-09 65.9 60 58.3
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.4e-06 55.8 123 35.0


User provided reference genes

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