Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.5e-32 142.1 109 100.0
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.6e-23 111.7 109 86.2
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.9e-16 89.4 109 63.3
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 5.6e-16 87.8 69 63.8
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 7.3e-16 87.4 65 63.1
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.2e-15 86.7 65 63.1
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 2.1e-15 85.9 63 63.5
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 3.6e-15 85.1 69 59.4
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 6.1e-15 84.3 68 57.4
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.8e-14 82.8 69 59.4
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.3e-14 82.4 63 55.6
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 3.0e-14 82.0 66 59.1
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 4.0e-14 81.6 69 58.0
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 4.0e-14 81.6 68 55.9
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.8e-14 80.9 69 59.4
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 6.8e-14 80.9 69 56.5
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 8.9e-14 80.5 63 60.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 8.9e-14 80.5 68 57.4
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.2e-13 80.1 69 58.0
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 2.0e-13 79.3 69 59.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.0e-13 79.3 69 53.6
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 2.0e-13 79.3 69 56.5
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 2.0e-13 79.3 68 55.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.6e-13 79.0 69 55.1
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 2.6e-13 79.0 69 55.1
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 3.4e-13 78.6 69 55.1
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 3.4e-13 78.6 63 55.6
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 4.4e-13 78.2 69 58.0
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 4.4e-13 78.2 69 58.0
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 4.4e-13 78.2 69 58.0
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 4.4e-13 78.2 69 58.0
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 7.5e-13 77.4 69 56.5
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 7.5e-13 77.4 62 59.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 9.8e-13 77.0 58 62.1
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-12 76.6 69 56.5
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.3e-12 76.6 59 59.3
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 1.7e-12 76.3 69 56.5
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.2e-12 75.9 69 56.5
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 2.2e-12 75.9 63 55.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 2.9e-12 75.5 69 55.1
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 2.9e-12 75.5 69 55.1
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.7e-12 75.1 62 61.3
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.9e-12 74.7 69 53.6
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 6.4e-12 74.3 69 50.7
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 1.1e-11 73.6 62 59.7
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.4e-11 73.2 69 52.2
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.4e-11 73.2 68 51.5
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.9e-11 72.8 65 52.3
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.9e-11 72.8 69 52.2
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.9e-11 72.8 69 50.7
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.9e-11 72.8 62 58.1
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.4e-11 72.4 69 52.2
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.4e-11 72.4 69 53.6
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.4e-11 72.4 69 49.3
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 3.2e-11 72.0 65 52.3
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 3.2e-11 72.0 66 51.5
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 4.1e-11 71.6 69 52.2
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 5.4e-11 71.2 69 50.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 7.0e-11 70.9 69 53.6
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 7.0e-11 70.9 58 56.9
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.0e-11 70.9 69 50.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.0e-11 70.9 63 55.6
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 9.2e-11 70.5 66 50.0
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 9.2e-11 70.5 61 50.8
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 9.2e-11 70.5 57 57.9
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 1.2e-10 70.1 59 52.5
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.6e-10 69.7 58 55.2
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.6e-10 69.7 59 57.6
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.0e-10 69.3 69 46.4
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.0e-10 69.3 69 50.7
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.7e-10 68.9 63 54.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 4.6e-10 68.2 58 60.3
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.6e-10 68.2 57 56.1
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 6.0e-10 67.8 62 54.8
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 6.0e-10 67.8 69 47.8
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 7.8e-10 67.4 69 47.8
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.0e-09 67.0 69 49.3
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.7e-09 66.2 67 44.8
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.3e-09 65.9 57 56.1
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 2.3e-09 65.9 63 49.2
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 2.3e-09 65.9 69 46.4
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.3e-09 65.9 69 46.4
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 2.3e-09 65.9 69 50.7
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 3.0e-09 65.5 69 47.8
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.0e-09 65.5 59 55.9
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 3.9e-09 65.1 62 53.2
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.9e-09 65.1 62 53.2
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 5.0e-09 64.7 63 50.8
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 5.0e-09 64.7 69 47.8
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 5.0e-09 64.7 69 47.8
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 8.6e-09 63.9 69 44.9
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.1e-08 63.5 156 30.1
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.1e-08 63.5 57 50.9
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 1.1e-08 63.5 53 56.6
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.1e-08 63.5 63 47.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.1e-08 63.5 69 44.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.5e-08 63.2 69 47.8
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.5e-08 63.2 60 51.7
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 1.9e-08 62.8 63 46.0
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.3e-08 62.0 65 49.2
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.3e-08 62.0 57 52.6
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 3.3e-08 62.0 51 54.9
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 4.3e-08 61.6 69 43.5
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 5.6e-08 61.2 62 48.4
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 5.6e-08 61.2 59 50.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 5.6e-08 61.2 98 38.8
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 9.5e-08 60.5 59 49.2
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 9.5e-08 60.5 57 52.6
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.2e-07 60.1 58 53.4
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 1.1e-06 57.0 53 52.8
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.2e-06 54.7 56 50.0
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.2e-06 54.7 50 50.0
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 5.2e-06 54.7 46 56.5
Os12g0146400 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 6.8e-06 54.3 56 46.4
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 6.8e-06 54.3 69 40.6


User provided reference genes

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