Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.2e-146 522.3 273 100.0
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 5.0e-114 414.8 273 77.7
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.2e-109 399.4 271 73.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 2.9e-106 389.0 271 73.4
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.6e-102 375.9 290 67.6
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 1.0e-95 354.0 271 68.6
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.0e-95 354.0 270 68.5
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 6.7e-95 351.3 270 69.3
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 3.3e-94 349.0 271 67.5
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 4.4e-94 348.6 271 67.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 7.5e-94 347.8 271 67.9
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.2e-93 346.3 271 68.3
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.1e-92 344.0 271 66.4
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.1e-92 344.0 271 67.9
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-92 343.2 271 67.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 9.1e-92 340.9 272 67.6
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 2.0e-91 339.7 271 67.2
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-90 337.4 271 66.8
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.7e-90 336.7 271 66.4
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.7e-90 336.7 272 66.2
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 8.5e-90 334.3 271 65.7
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-89 334.0 289 64.4
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.9e-89 333.2 263 65.8
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.9e-89 333.2 271 64.9
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 3.2e-89 332.4 271 64.9
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 5.5e-89 331.6 271 66.4
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 5.5e-89 331.6 273 62.3
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.6e-88 330.1 271 64.2
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 2.1e-88 329.7 271 64.6
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.1e-88 329.7 270 64.8
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 2.7e-88 329.3 282 62.1
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 3.6e-88 328.9 271 64.2
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.6e-88 328.9 273 64.8
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 3.6e-88 328.9 281 63.7
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 3.6e-88 328.9 271 64.2
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 8.0e-88 327.8 269 66.9
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 8.0e-88 327.8 271 63.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.0e-87 327.4 271 63.5
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.3e-87 326.2 271 65.7
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 3.0e-87 325.9 271 63.8
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 3.0e-87 325.9 271 64.9
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.8e-87 324.7 271 62.7
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.5e-86 323.6 271 64.2
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 3.4e-86 322.4 271 63.1
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 3.4e-86 322.4 267 65.5
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 3.4e-86 322.4 271 63.5
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 4.4e-86 322.0 270 62.6
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.2e-85 319.7 273 63.7
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 2.2e-85 319.7 271 62.4
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 2.8e-85 319.3 271 62.4
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.3e-85 318.2 271 62.7
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 8.3e-85 317.8 291 61.5
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 8.3e-85 317.8 314 58.3
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.1e-84 317.4 269 63.9
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.4e-84 316.2 271 61.6
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 7.0e-84 314.7 271 62.0
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 7.0e-84 314.7 264 63.3
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.7e-83 311.2 295 58.0
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.3e-82 310.5 271 60.5
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.7e-82 310.1 266 62.0
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.3e-82 309.7 268 62.7
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.8e-82 308.9 263 61.2
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 8.6e-82 307.8 269 61.3
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.1e-81 307.4 263 62.0
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.9e-81 306.6 264 61.4
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.9e-81 306.6 265 60.8
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.9e-81 306.6 271 61.3
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 2.5e-81 306.2 295 58.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.5e-81 306.2 263 61.6
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 3.3e-81 305.8 263 61.2
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 4.2e-81 305.4 263 61.6
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 4.2e-81 305.4 273 59.0
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 5.5e-81 305.1 263 61.2
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 7.2e-81 304.7 343 51.3
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 9.5e-81 304.3 263 60.5
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-80 303.9 263 60.8
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.2e-80 303.9 266 61.3
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.6e-80 303.5 297 57.2
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.6e-80 303.5 263 60.5
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.6e-80 303.5 263 60.5
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.1e-80 303.1 271 60.1
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 4.7e-80 302.0 271 61.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.7e-80 302.0 228 69.7
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.7e-80 302.0 277 60.6
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 2.3e-79 299.7 271 60.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 9.2e-76 287.7 271 57.6
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 2.0e-75 286.6 250 62.4
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 2.7e-75 286.2 286 54.9
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 2.7e-75 286.2 234 67.1
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.7e-74 283.5 245 62.9
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.5e-73 279.6 260 57.7
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 7.3e-73 278.1 257 59.5
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-72 276.9 379 44.6
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.1e-72 276.6 268 58.2
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.1e-72 276.6 271 56.5
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 6.8e-71 271.6 265 56.2
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.6e-70 269.6 274 56.6
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 7.5e-70 268.1 234 62.8
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.7e-69 266.9 297 52.2
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.2e-69 266.5 234 62.8
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.7e-69 265.8 234 62.8
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 4.9e-69 265.4 234 63.7
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 6.4e-69 265.0 283 53.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 8.3e-69 264.6 234 62.4
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.4e-68 263.8 235 63.0
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.1e-68 262.3 236 61.9
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.2e-68 261.2 234 61.5
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.2e-67 260.8 257 57.2
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.3e-66 257.3 297 51.2
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.3e-66 257.3 281 50.2
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.5e-65 253.8 258 55.8
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 8.0e-64 248.1 268 55.6
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.9e-61 238.8 277 50.2
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.9e-60 236.9 239 54.4
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.2e-59 234.2 235 58.7
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.4e-55 220.7 236 53.8
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 3.4e-54 216.1 156 67.3
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 3.4e-54 216.1 181 65.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 4.4e-54 215.7 160 69.4
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 5.8e-54 215.3 235 54.0
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 9.2e-52 208.0 233 55.4
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 4.7e-48 195.7 229 50.2
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 6.2e-48 195.3 235 49.4
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.8e-47 193.7 127 74.8
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.6e-46 189.9 205 51.7
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 3.8e-45 186.0 174 57.5
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 4.9e-45 185.7 157 64.3
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 4.6e-43 179.1 260 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.5e-41 174.1 252 42.1
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.1e-40 170.2 176 55.1
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 4.0e-39 166.0 271 39.9
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.5e-38 164.1 163 56.4
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 4.4e-38 162.5 256 38.3
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.9e-36 157.1 113 69.9
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.9e-36 157.1 113 69.9
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-34 151.4 112 69.6
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 6.2e-32 142.1 104 69.2
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.1e-31 141.4 235 41.7
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.8e-31 140.6 227 41.0
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.4e-28 130.2 86 76.7
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-25 118.2 151 43.7
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.7e-24 116.3 126 55.6
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.4e-23 113.6 108 55.6
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-17 94.7 95 50.5
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.3e-16 91.3 283 29.3
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.8e-07 60.8 163 31.3


User provided reference genes

Program Settings