Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 6.1e-132 474.2 243 100.0
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 7.2e-48 194.9 250 50.8
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 6.1e-47 191.8 254 52.4
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.8e-43 180.3 252 50.0
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.9e-40 170.2 247 48.2
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.6e-39 167.2 250 45.6
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.7e-39 165.6 250 45.6
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.8e-38 163.7 246 45.5
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.8e-35 153.7 246 44.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.8e-35 153.7 258 45.0
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.1e-35 151.4 244 45.9
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.2e-31 141.0 244 41.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 3.0e-30 136.3 276 43.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.8e-30 134.8 275 38.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 8.8e-30 134.8 254 44.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 5.7e-29 132.1 263 39.2
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 7.5e-29 131.7 264 39.8
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.3e-28 131.0 264 39.4
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.2e-28 130.2 263 41.8
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.2e-28 130.2 263 41.8
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.8e-28 129.8 259 40.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 6.3e-28 128.6 265 39.2
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.1e-27 127.9 263 39.5
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.4e-27 127.5 270 38.1
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.4e-27 126.7 268 39.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.4e-27 126.7 260 38.8
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 9.1e-27 124.8 262 41.6
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 9.1e-27 124.8 271 38.0
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-26 124.4 202 45.0
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.6e-26 124.0 179 46.4
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.0e-26 123.6 267 38.2
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.0e-26 123.6 261 39.8
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.5e-26 122.9 260 38.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 7.7e-26 121.7 261 37.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 7.7e-26 121.7 258 40.3
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.0e-25 121.3 259 40.9
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.0e-25 121.3 246 39.0
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.3e-25 120.9 261 40.2
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.7e-25 120.6 273 38.1
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.7e-25 120.6 266 38.3
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.3e-25 120.2 202 45.0
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.3e-25 120.2 265 38.5
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.9e-25 119.8 263 41.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.8e-25 119.4 264 40.2
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 5.0e-25 119.0 260 36.9
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 5.0e-25 119.0 261 37.9
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 5.0e-25 119.0 283 35.3
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.6e-25 118.6 263 38.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 8.6e-25 118.2 202 41.6
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.9e-24 117.1 265 37.4
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.5e-24 116.7 269 37.9
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.3e-24 116.3 266 38.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.2e-24 115.9 269 37.9
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.2e-24 115.9 261 41.0
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 4.2e-24 115.9 263 38.0
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 5.5e-24 115.5 271 41.3
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.2e-24 115.2 190 44.2
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 7.2e-24 115.2 295 36.6
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-24 114.8 256 41.0
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-24 114.8 256 41.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-24 114.8 260 39.6
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 9.5e-24 114.8 270 38.1
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 9.5e-24 114.8 260 38.1
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.2e-23 114.4 261 41.4
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.6e-23 114.0 265 38.5
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.6e-23 114.0 190 44.2
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 2.1e-23 113.6 270 37.0
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.1e-23 113.6 279 38.0
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.8e-23 113.2 266 38.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.6e-23 112.8 157 46.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 3.6e-23 112.8 272 39.0
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 4.7e-23 112.5 262 37.4
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 4.7e-23 112.5 269 36.1
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 6.1e-23 112.1 265 37.4
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 6.1e-23 112.1 263 39.2
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 6.1e-23 112.1 260 38.8
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 8.0e-23 111.7 266 38.0
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.0e-22 111.3 269 39.0
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.0e-22 111.3 265 37.0
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-22 110.9 258 36.4
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.4e-22 110.9 256 39.5
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-22 110.9 256 39.5
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.8e-22 110.5 262 36.6
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.3e-22 110.2 262 37.0
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.3e-22 110.2 262 38.9
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.3e-22 110.2 263 36.9
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-22 109.8 262 36.3
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 3.0e-22 109.8 208 42.3
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.0e-22 109.8 267 38.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.0e-22 109.8 267 38.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.2e-22 109.0 262 36.6
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.2e-22 109.0 257 38.1
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.2e-22 109.0 257 38.1
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 5.2e-22 109.0 276 35.5
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 8.9e-22 108.2 259 36.3
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.2e-21 107.8 264 37.1
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-21 107.5 260 38.5
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.5e-21 107.5 180 43.9
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.6e-21 106.7 265 38.1
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.6e-21 106.7 157 44.6
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.6e-21 106.7 181 40.9
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.4e-21 106.3 259 37.5
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 4.4e-21 105.9 267 37.5
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.7e-21 105.5 181 43.6
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 5.7e-21 105.5 263 36.1
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 7.5e-21 105.1 271 37.3
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 9.8e-21 104.8 259 36.3
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 9.8e-21 104.8 274 37.2
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-20 104.4 265 37.0
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.3e-20 104.4 260 36.9
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.7e-20 104.0 268 38.4
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 6.3e-20 102.1 260 35.8
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 8.3e-20 101.7 172 44.2
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.1e-19 101.3 190 41.6
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-19 100.9 254 34.6
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-19 100.9 254 34.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.4e-19 100.9 177 40.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.8e-19 100.5 154 42.2
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.2e-19 99.8 252 38.9
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.1e-19 99.4 270 34.8
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.4e-19 99.0 182 40.7
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.4e-19 99.0 246 37.4
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.4e-19 99.0 257 37.7
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 5.4e-19 99.0 174 44.3
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 7.0e-19 98.6 259 34.0
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 7.0e-19 98.6 180 41.1
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 7.0e-19 98.6 233 36.9
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 9.2e-19 98.2 260 35.4
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-18 97.1 179 41.3
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 2.7e-18 96.7 173 43.4
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.5e-18 96.3 158 43.7
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 3.5e-18 96.3 216 38.0
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 3.5e-18 96.3 198 40.9
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 5.9e-18 95.5 149 42.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-17 94.7 225 37.8
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.0e-17 94.7 280 33.2
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-17 94.4 255 34.9
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.3e-17 94.4 255 34.9
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.7e-17 94.0 161 41.0
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.3e-17 93.6 183 37.7
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 2.3e-17 93.6 260 36.2
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.9e-17 93.2 175 40.6
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 5.0e-17 92.4 278 33.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 5.0e-17 92.4 276 33.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 5.0e-17 92.4 275 33.1
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.6e-17 92.0 138 45.7
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 8.6e-17 91.7 245 35.1
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.1e-16 91.3 258 33.7
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.3e-16 89.4 152 43.4
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 5.6e-16 89.0 253 36.0
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.6e-16 89.0 269 33.5
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 9.5e-16 88.2 273 35.5
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-15 87.8 228 37.3
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.6e-15 87.4 196 38.8
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 6.1e-15 85.5 318 32.1
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.4e-14 84.3 271 32.5
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.3e-14 83.6 138 41.3
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 6.8e-14 82.0 254 34.3
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 6.8e-14 82.0 254 33.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.6e-13 80.1 193 36.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 3.2e-11 73.2 135 36.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.0e-09 65.9 115 38.3
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 4.3e-08 62.8 93 41.9
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-07 60.5 264 27.7
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.7e-07 59.3 118 37.3
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.4e-06 57.8 125 33.6
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 1.8e-06 57.4 95 37.9
HPP92_015769 Vanilla planifolia HOM05D020767 ORTHO05D003885 3.1e-06 56.6 107 34.6
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 6.8e-06 55.5 224 29.9
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 6.8e-06 55.5 182 29.7


User provided reference genes

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