Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 3.8e-293 1010.7 503 100.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-91 341.3 513 43.5
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 3.0e-88 330.1 517 41.8
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 8.6e-88 328.6 535 40.7
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.8e-85 320.9 530 40.0
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 2.4e-85 320.5 520 41.2
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.1e-85 320.1 537 38.5
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 3.1e-85 320.1 517 40.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.1e-85 320.1 543 38.7
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.8e-85 318.9 542 39.1
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.8e-85 318.9 548 37.4
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 7.6e-84 315.5 533 39.8
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.9e-84 315.1 503 40.6
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.7e-83 314.3 512 38.9
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 3.8e-83 313.2 467 44.5
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 3.8e-83 313.2 535 37.4
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.8e-83 313.2 528 40.5
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.8e-83 313.2 500 39.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 3.8e-83 313.2 518 40.9
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.1e-82 311.6 517 39.7
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.4e-82 310.5 504 39.3
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.2e-82 310.1 504 41.5
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 9.2e-82 308.5 519 39.5
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 9.2e-82 308.5 522 38.5
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.2e-81 308.1 513 40.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.7e-81 307.0 535 37.0
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 3.5e-81 306.6 517 39.3
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 4.6e-81 306.2 515 41.2
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.0e-81 305.8 548 39.2
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 6.0e-81 305.8 539 38.2
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 6.0e-81 305.8 464 40.9
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 7.8e-81 305.4 453 42.2
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 7.8e-81 305.4 456 40.1
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.0e-80 305.1 520 41.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.0e-80 305.1 508 38.0
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.3e-80 304.7 518 37.6
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.3e-80 304.7 509 40.5
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.7e-80 304.3 537 36.5
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 3.0e-80 303.5 520 37.5
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 5.1e-80 302.8 508 39.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.1e-80 302.8 510 40.2
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 5.6e-79 299.3 535 37.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 7.3e-79 298.9 519 38.3
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.8e-78 297.0 528 37.3
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.8e-78 297.0 463 43.2
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.6e-78 296.6 563 37.7
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.6e-78 296.6 472 39.8
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.8e-77 294.3 538 37.2
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.9e-77 292.4 521 38.8
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 6.9e-77 292.4 513 37.2
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.2e-76 291.6 512 35.7
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-76 290.8 456 40.1
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.4e-76 290.0 526 37.8
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 4.4e-76 289.7 428 44.4
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 7.6e-76 288.9 516 36.0
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.7e-75 287.7 511 37.0
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.7e-75 287.7 506 38.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.2e-75 287.3 527 36.4
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.9e-75 287.0 491 36.7
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.4e-74 283.9 528 37.3
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 3.2e-74 283.5 508 37.8
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 3.2e-74 283.5 508 37.8
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 3.2e-74 283.5 508 37.8
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.2e-74 283.5 454 39.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.4e-74 282.7 506 35.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.2e-73 281.6 456 41.4
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-73 281.6 456 41.4
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.2e-73 281.6 456 41.4
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.1e-73 280.8 533 35.1
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.7e-73 280.4 460 38.3
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.7e-73 280.4 424 40.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 3.5e-73 280.0 400 41.8
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 3.5e-73 280.0 447 38.7
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 4.6e-73 279.6 518 35.1
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 3.0e-72 276.9 516 36.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 3.9e-72 276.6 495 37.6
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 5.1e-72 276.2 490 36.9
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 6.6e-72 275.8 432 38.4
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.6e-72 275.8 360 42.8
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.1e-71 275.0 504 36.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.1e-71 275.0 530 35.7
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.5e-71 273.9 495 37.2
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 4.3e-71 273.1 491 37.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 9.6e-71 271.9 506 36.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 4.8e-70 269.6 467 37.3
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 8.1e-70 268.9 481 37.0
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.1e-69 268.5 416 40.9
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-69 268.1 512 36.3
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.4e-69 268.1 512 36.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.4e-69 268.1 471 37.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.1e-69 266.9 363 40.2
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 5.3e-69 266.2 506 37.4
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.9e-69 265.8 386 41.5
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 9.0e-69 265.4 399 41.4
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.2e-68 265.0 478 37.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.5e-68 264.6 509 35.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.5e-68 264.6 513 37.2
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.0e-68 264.2 456 37.1
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.6e-68 263.8 494 37.9
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 5.8e-68 262.7 377 43.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.2e-67 260.8 431 37.4
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.8e-67 260.0 368 41.3
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.8e-67 260.0 353 41.1
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 6.4e-67 259.2 491 35.8
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.1e-66 258.5 369 40.1
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 2.4e-66 257.3 446 37.0
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 4.2e-66 256.5 473 36.4
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.2e-65 255.0 480 36.7
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 6.0e-65 252.7 496 34.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.1e-63 248.4 530 35.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 8.1e-62 242.3 405 38.0
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.1e-61 241.9 363 41.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.1e-61 240.4 498 35.7
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.1e-61 240.4 456 35.7
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-59 235.0 488 37.1
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.4e-58 231.5 421 35.9
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 3.2e-58 230.3 358 40.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 9.3e-58 228.8 453 35.1
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 9.3e-58 228.8 367 38.1
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.6e-57 226.5 401 35.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 6.0e-57 226.1 344 39.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 6.0e-57 226.1 368 37.8
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 7.9e-57 225.7 296 44.3
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 6.7e-56 222.6 304 40.5
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.5e-55 220.7 366 39.1
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 5.6e-55 219.5 491 33.4
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.6e-55 219.5 425 35.5
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.4e-53 214.9 362 39.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.4e-52 210.3 317 38.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.9e-51 206.5 356 39.9
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.1e-50 205.3 302 41.4
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.9e-50 204.5 430 33.3
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.5e-50 204.1 546 32.4
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 6.7e-48 196.1 297 37.0
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.3e-47 193.7 434 32.0
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.3e-47 193.4 433 32.1
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.7e-43 181.4 430 32.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.7e-43 181.4 430 32.6
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.0e-40 172.2 328 35.7
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 5.1e-40 169.9 205 45.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.2e-38 162.5 409 31.1
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.7e-33 146.7 246 36.6
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.5e-31 141.7 184 41.3
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.4e-31 140.2 183 40.4
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.4e-31 139.4 316 27.5
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.8e-30 137.5 222 36.9
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-28 131.7 318 30.2
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-27 129.0 305 27.9
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.9e-27 127.5 416 26.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.7e-25 120.9 317 28.4
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 3.6e-25 120.6 280 30.7
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.9e-24 117.1 175 46.9
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.1e-21 109.0 261 28.4
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-19 102.1 237 29.5
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-19 101.7 345 25.2
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.6e-17 95.1 125 41.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.1e-17 94.7 116 40.5
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.4e-16 92.0 155 41.3
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.5e-12 77.4 80 48.8
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 3.8e-11 73.9 87 44.8
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 6.1e-09 66.6 44 72.7


User provided reference genes

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