Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005950 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.9e-58 228.4 120 100.0
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 8.8e-15 84.0 70 64.3
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 4.4e-14 81.6 94 50.0
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.3e-13 80.1 70 64.3
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 2.2e-13 79.3 88 50.0
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 6.3e-13 77.8 64 62.5
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 8.3e-13 77.4 64 60.9
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 1.4e-12 76.6 58 65.5
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.8e-12 76.3 78 55.1
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 4.1e-12 75.1 69 56.5
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 5.4e-12 74.7 55 67.3
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 5.4e-12 74.7 59 64.4
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.0e-12 74.3 78 53.8
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.2e-11 73.6 64 59.4
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.2e-11 73.6 64 60.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 1.6e-11 73.2 78 50.0
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 2.0e-11 72.8 93 46.2
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.7e-11 72.4 88 46.6
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 2.7e-11 72.4 71 54.9
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 5.9e-11 71.2 60 61.7
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.7e-11 70.9 78 51.3
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 1.0e-10 70.5 61 62.3
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 1.3e-10 70.1 78 47.4
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-10 70.1 93 45.2
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.3e-10 70.1 91 46.2
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 6.6e-10 67.8 70 52.9
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 8.6e-10 67.4 85 44.7
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 8.6e-10 67.4 62 56.5
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-09 67.0 64 56.2
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-09 67.0 64 56.2
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 1.1e-09 67.0 93 45.2
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 1.1e-09 67.0 61 59.0
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.1e-09 67.0 67 55.2
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.1e-09 67.0 64 56.2
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.5e-09 66.6 62 56.5
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 1.9e-09 66.2 64 56.2
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 1.9e-09 66.2 64 56.2
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.9e-09 66.2 60 60.0
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.5e-09 65.9 77 49.4
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.5e-09 65.9 64 54.7
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 3.3e-09 65.5 61 57.4
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 3.3e-09 65.5 60 58.3
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.3e-09 65.5 60 58.3
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 4.2e-09 65.1 59 52.5
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 4.2e-09 65.1 63 50.8
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.2e-09 64.3 60 56.7
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 9.5e-09 63.9 59 57.6
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 2.1e-08 62.8 64 53.1
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 2.8e-08 62.4 58 55.2
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 4.7e-08 61.6 58 55.2
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 4.7e-08 61.6 58 55.2
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 4.7e-08 61.6 92 42.4
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 6.1e-08 61.2 64 51.6
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 6.1e-08 61.2 64 51.6
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 8.0e-08 60.8 64 48.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 1.4e-07 60.1 58 50.0
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.4e-07 60.1 58 53.4
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.8e-07 59.7 64 48.4
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.8e-07 59.7 62 48.4
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.8e-07 59.7 64 50.0
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.0e-07 58.9 60 53.3
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.0e-07 58.9 72 44.4
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 3.0e-07 58.9 64 50.0
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.2e-07 58.2 60 53.3
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 5.2e-07 58.2 58 53.4
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 6.8e-07 57.8 77 42.9
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 6.8e-07 57.8 63 49.2
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 6.8e-07 57.8 59 52.5
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 6.8e-07 57.8 64 50.0
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 8.9e-07 57.4 63 49.2
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 8.9e-07 57.4 64 48.4
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.2e-06 57.0 61 50.8
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 1.2e-06 57.0 57 45.6
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.2e-06 57.0 63 47.6
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 1.5e-06 56.6 63 47.6
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.5e-06 56.6 63 47.6
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.5e-06 56.6 63 47.6
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 1.5e-06 56.6 64 45.3
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 2.0e-06 56.2 58 55.2
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.0e-06 56.2 64 46.9
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 2.0e-06 56.2 68 41.2
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 2.0e-06 56.2 62 48.4
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 3.4e-06 55.5 64 43.8
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 3.4e-06 55.5 58 44.8
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.4e-06 55.1 58 51.7
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 4.4e-06 55.1 70 44.3
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 5.7e-06 54.7 64 43.8
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 7.5e-06 54.3 59 50.8
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 7.5e-06 54.3 64 43.8
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 9.8e-06 53.9 70 42.9
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 9.8e-06 53.9 70 44.3
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 9.8e-06 53.9 59 50.8
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 9.8e-06 53.9 59 44.1


User provided reference genes

Program Settings