Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005900 Simmondsia chinensis HOM05D001040 ORTHO05D024541 6.8e-37 157.1 99 100.0
Sc19g0005850 Simmondsia chinensis HOM05D001040 ORTHO05D002311 2.3e-13 79.0 38 89.5
AUR62035323 Chenopodium quinoa HOM05D001040 ORTHO05D002311 4.4e-12 74.7 52 65.4
EL10Ac3g06770 Beta vulgaris HOM05D001040 ORTHO05D002311 8.3e-11 70.5 38 78.9
Nitab4.5_0003782g0110 Nicotiana tabacum HOM05D001040 ORTHO05D002311 8.3e-11 70.5 38 73.7
TAR362G1209 Trochodendron aralioides HOM05D001040 ORTHO05D002311 1.4e-10 69.7 39 71.8
Eucgr.H00108 Eucalyptus grandis HOM05D001040 ORTHO05D002311 1.9e-10 69.3 38 71.1
CSS0031351 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 2.4e-10 68.9 38 76.3
CSS0030978 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 3.2e-10 68.6 38 73.7
PGR004G2858 Punica granatum HOM05D001040 ORTHO05D002311 7.1e-10 67.4 38 71.1
Nitab4.5_0006812g0030 Nicotiana tabacum HOM05D001040 ORTHO05D002311 9.2e-10 67.0 38 71.1
GSVIVG01029029001 Vitis vinifera HOM05D001040 ORTHO05D002311 9.2e-10 67.0 37 73.0
Aqoxy2G03822 Aquilegia oxysepala HOM05D001040 ORTHO05D002311 1.2e-09 66.6 38 73.7
Phvul.007G238300 Phaseolus vulgaris HOM05D001040 ORTHO05D002311 1.2e-09 66.6 39 71.8
THA.LOC104816016 Tarenaya hassleriana HOM05D001040 ORTHO05D002311 1.6e-09 66.2 38 68.4
Oeu028090.1 Olea europaea HOM05D001040 ORTHO05D002311 2.1e-09 65.9 37 70.3
Sed0009397 Sechium edule HOM05D001040 ORTHO05D002311 2.1e-09 65.9 38 68.4
CAN.G1588.6 Capsicum annuum HOM05D001040 ORTHO05D002311 2.7e-09 65.5 38 71.1
Thhalv10016703m.g Eutrema salsugineum HOM05D001040 ORTHO05D002311 2.7e-09 65.5 38 65.8
Sabra03G0127700 Salix brachista HOM05D001040 ORTHO05D002311 2.7e-09 65.5 38 71.1
AT2G33205 Arabidopsis thaliana HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 65.8
BcaB06g28661 Brassica carinata HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 63.2
BcaC02g07852 Brassica carinata HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 63.2
BolC4t27751H Brassica oleracea HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 63.2
BraA04t18057Z Brassica rapa HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 63.2
CiPaw.01G205800 Carya illinoinensis HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 71.1
HanXRQChr02g0059451 Helianthus annuus HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 68.4
Lsat_1_v5_gn_6_63101 Lactuca sativa HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 71.1
Peaxi162Scf00047g01545 Petunia axillaris HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 68.4
Potri.003G174200 Populus trichocarpa HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 68.4
Solyc09g091200.3 Solanum lycopersicum HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 68.4
Sopen09g034170 Solanum pennellii HOM05D001040 ORTHO05D002311 3.5e-09 65.1 38 68.4
AL4G29530 Arabidopsis lyrata HOM05D001040 ORTHO05D002311 4.6e-09 64.7 38 65.8
RcHm_v2.0_Chr4g0396601 Rosa chinensis HOM05D001040 ORTHO05D002311 4.6e-09 64.7 38 68.4
AL4G28820 Arabidopsis lyrata HOM05D001040 ORTHO05D002311 6.0e-09 64.3 38 65.8
Lj6g0006756 Lotus japonicus HOM05D001040 ORTHO05D002311 6.0e-09 64.3 48 58.3
Aa31LG5G4090 Aethionema arabicum HOM05D001040 ORTHO05D002311 7.8e-09 63.9 38 63.2
Cpa.g.sc59.69 Carica papaya HOM05D001040 ORTHO05D002311 7.8e-09 63.9 38 71.1
FAN17G3080 Fragaria x ananassa HOM05D001040 ORTHO05D002311 7.8e-09 63.9 39 64.1
Cc03_g07060 Coffea canephora HOM05D001040 ORTHO05D002311 1.0e-08 63.5 37 70.3
Manes.15G049900 Manihot esculenta HOM05D001040 ORTHO05D002311 1.0e-08 63.5 37 67.6
Rhsim09G0047100 Rhododendron simsii HOM05D001040 ORTHO05D002311 1.0e-08 63.5 33 75.8
MELO3C031654.2 Cucumis melo HOM05D001040 ORTHO05D002311 1.3e-08 63.2 38 68.4
CsaV3_3G011400 Cucumis sativus L. HOM05D001040 ORTHO05D002311 1.3e-08 63.2 38 68.4
Dinv38292 Davidia involucrata HOM05D001040 ORTHO05D002311 1.3e-08 63.2 38 63.2
FAN12G2510 Fragaria x ananassa HOM05D001040 ORTHO05D002311 1.3e-08 63.2 38 65.8
Glyma.20G078900 Glycine max HOM05D001040 ORTHO05D002311 1.7e-08 62.8 39 66.7
MBI10_g16820_MAGBIO Magnolia biondii HOM05D001040 ORTHO05D002311 1.7e-08 62.8 38 65.8
Prupe.1G056600 Prunus persica HOM05D001040 ORTHO05D002311 1.7e-08 62.8 38 68.4
SalBow2G1751 Salvia bowleyana HOM05D001040 ORTHO05D002311 1.7e-08 62.8 37 67.6
Sp4g15500 Schrenkiella parvula HOM05D001040 ORTHO05D002311 1.7e-08 62.8 38 60.5
TWI09G0288 Tripterygium wilfordii HOM05D001040 ORTHO05D002311 1.7e-08 62.8 39 61.5
Atru.chr4.1815 Acer truncatum HOM05D001040 ORTHO05D002311 2.3e-08 62.4 38 68.4
FvH4_4g05470 Fragaria vesca HOM05D001040 ORTHO05D002311 2.3e-08 62.4 38 65.8
QL06p022753 Quercus lobata HOM05D001040 ORTHO05D002311 2.3e-08 62.4 38 73.7
MSTRG.4201 Avicennia marina HOM05D001040 ORTHO05D002311 3.0e-08 62.0 37 67.6
Carub.0004s1466 Capsella rubella HOM05D001040 ORTHO05D002311 3.0e-08 62.0 38 63.2
Haze_11537 Corylus avellana HOM05D001040 ORTHO05D002311 3.0e-08 62.0 37 70.3
DCAR_027364 Daucus carota HOM05D001040 ORTHO05D002311 3.9e-08 61.6 39 61.5
Migut.G00608 Erythranthe guttata HOM05D001040 ORTHO05D002311 3.9e-08 61.6 37 67.6
Gohir.D10G146100 Gossypium hirsutum HOM05D001040 ORTHO05D002311 3.9e-08 61.6 40 62.5
MD13G1230200 Malus domestica HOM05D001040 ORTHO05D002311 3.9e-08 61.6 37 64.9
Rhsim09G0046500 Rhododendron simsii HOM05D001040 ORTHO05D002311 3.9e-08 61.6 33 69.7
SGA_v2.0_scaffold155G37229 Striga asiatica HOM05D001040 ORTHO05D002311 3.9e-08 61.6 37 64.9
ClCG05G003680 Citrullus lanatus HOM05D001040 ORTHO05D002311 5.1e-08 61.2 38 68.4
vmacro00520 Vaccinium macrocarpon HOM05D001040 ORTHO05D002311 5.1e-08 61.2 33 69.7
CARHR127200 Cardamine hirsuta HOM05D001040 ORTHO05D002311 6.6e-08 60.8 37 62.2
Gohir.A09G201950 Gossypium hirsutum HOM05D001040 ORTHO05D002311 6.6e-08 60.8 39 59.0
Gohir.D09G195966 Gossypium hirsutum HOM05D001040 ORTHO05D002311 6.6e-08 60.8 39 59.0
Gorai.006G219300 Gossypium raimondii HOM05D001040 ORTHO05D002311 6.6e-08 60.8 39 59.0
Medtr1g046480 Medicago truncatula HOM05D001040 ORTHO05D002311 6.6e-08 60.8 39 64.1
Psat6g047480 Pisum sativum HOM05D001040 ORTHO05D002311 6.6e-08 60.8 48 56.2
CANSAT78G0674 Cannabis sativa HOM05D001040 ORTHO05D002311 8.6e-08 60.5 38 65.8
Hma1.2p1_0903F.1_g234980 Hydrangea macrophylla HOM05D001040 ORTHO05D002311 8.6e-08 60.5 38 63.2
Lj3C598T15 Lonicera japonica HOM05D001040 ORTHO05D002311 8.6e-08 60.5 51 54.9
Lju414C2T1 Lonicera japonica HOM05D001040 ORTHO05D002311 8.6e-08 60.5 51 54.9
Nn3g19864 Nelumbo nucifera HOM05D001040 ORTHO05D002311 8.6e-08 60.5 33 72.7
Thecc.04G214900 Theobroma cacao HOM05D001040 ORTHO05D002311 1.5e-07 59.7 38 65.8
Ah.13g075170 Amaranthus hybridus HOM05D000415 ORTHO05D002017 1.9e-07 59.3 34 76.5
Ciclev10006912m.g Citrus clementina HOM05D001040 ORTHO05D002311 3.3e-07 58.5 37 64.9
BolC4t27748H Brassica oleracea HOM05D001040 ORTHO05D024541 4.3e-07 58.2 33 63.6
BraA04t18056Z Brassica rapa HOM05D001040 ORTHO05D024541 4.3e-07 58.2 33 63.6
Gohir.A10G120400 Gossypium hirsutum HOM05D001040 ORTHO05D002311 4.3e-07 58.2 38 63.2
Gorai.011G163200 Gossypium raimondii HOM05D001040 ORTHO05D002311 4.3e-07 58.2 38 63.2
Hund24852 Selenicereus undatus HOM05D001040 ORTHO05D002311 4.3e-07 58.2 34 73.5
A04p25530 Brassica napus HOM05D001040 ORTHO05D002311 7.3e-07 57.4 32 65.6
C04p62680 Brassica napus HOM05D001040 ORTHO05D002311 7.3e-07 57.4 32 65.6
C04p62670 Brassica napus HOM05D001040 ORTHO05D024541 1.2e-06 56.6 33 60.6
Actinidia35939 Actinidia chinensis HOM05D001040 ORTHO05D002311 1.6e-06 56.2 30 70.0
COL.COLO4_05726 Corchorus olitorius HOM05D001040 ORTHO05D002311 2.8e-06 55.5 38 57.9
FAN12G1971 Fragaria x ananassa HOM05D001040 ORTHO05D002311 3.6e-06 55.1 33 66.7
Lalb_Chr01g0011231 Lupinus albus HOM05D001040 ORTHO05D002311 3.6e-06 55.1 39 64.1
A04p25520 Brassica napus HOM05D001040 ORTHO05D024541 4.7e-06 54.7 30 63.3
Duzib268G1418 Durio zibethinus HOM05D001040 ORTHO05D002311 6.2e-06 54.3 38 57.9


User provided reference genes

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