Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 0.0e+00 2018.8 1021 100.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 0.0e+00 1170.6 1003 58.9
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 0.0e+00 1159.8 1018 58.1
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 0.0e+00 1139.4 1003 58.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 6.5e-308 1060.8 983 55.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.9e-304 1049.3 973 57.2
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 1.2e-298 1030.0 1005 53.7
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.4e-278 963.4 996 51.3
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 2.0e-277 959.5 1002 51.6
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 5.0e-276 954.9 1001 51.3
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 1.9e-275 953.0 993 51.2
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.8e-273 946.4 998 50.6
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 2.0e-272 943.0 991 51.0
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 5.7e-272 941.4 974 51.6
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.8e-271 939.1 989 49.6
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 4.8e-271 938.3 996 49.7
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.0e-268 930.6 984 51.2
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.9e-268 929.1 977 50.6
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 2.0e-264 916.4 950 51.6
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 2.6e-264 916.0 970 49.5
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 4.4e-264 915.2 994 49.4
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 6.3e-263 911.4 1004 49.2
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 7.0e-262 907.9 997 49.7
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.2e-261 907.1 1019 47.8
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 4.6e-245 852.0 978 48.1
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 7.3e-243 844.7 972 48.0
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 3.6e-242 842.4 980 46.9
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.7e-239 833.6 949 47.9
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 2.2e-231 806.6 1090 42.5
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 5.1e-228 795.4 1095 42.0
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.1e-227 794.3 997 45.8
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 4.3e-227 792.3 1012 43.1
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.3e-220 770.0 982 44.5
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 7.1e-214 748.4 992 43.1
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.2e-213 747.7 1226 38.1
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 9.0e-209 731.5 803 48.9
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 2.5e-187 660.2 610 56.2
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 6.9e-177 625.5 501 62.5
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.0e-176 624.0 1317 33.0
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.1e-174 618.2 498 60.6
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.5e-171 607.8 482 61.0
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.4e-171 605.5 466 62.4
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.3e-170 604.7 548 56.8
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.8e-169 600.9 467 63.2
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 3.1e-169 600.1 498 59.0
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 5.3e-169 599.4 461 62.9
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 2.5e-166 590.5 465 61.9
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 6.1e-165 585.9 462 59.3
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 3.0e-164 583.6 458 60.7
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 3.0e-164 583.6 468 59.4
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 4.4e-163 579.7 455 60.4
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.2e-160 571.6 462 58.0
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 5.9e-160 569.3 481 58.0
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.1e-158 565.1 460 60.9
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.9e-158 564.3 462 56.9
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 7.2e-158 562.4 462 56.9
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 9.4e-158 562.0 462 57.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 3.6e-157 560.1 473 56.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.3e-156 557.4 462 55.6
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 4.0e-156 556.6 458 61.4
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 2.2e-154 550.8 468 59.2
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 6.3e-154 549.3 458 58.5
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 7.7e-152 542.3 493 54.6
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 4.2e-150 536.6 486 55.6
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 8.8e-148 528.9 464 57.1
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 5.7e-147 526.2 464 56.7
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 4.8e-146 523.1 1084 32.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 4.1e-145 520.0 458 55.5
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 7.0e-145 519.2 751 41.9
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 5.9e-144 516.2 449 56.6
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.7e-143 514.6 456 52.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 3.8e-143 513.5 1085 32.2
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 3.8e-143 513.5 384 64.3
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 5.0e-143 513.1 449 56.1
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.5e-142 510.8 459 53.8
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 2.8e-141 507.3 484 51.4
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 3.6e-141 506.9 471 52.4
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.4e-140 505.0 457 53.8
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 6.8e-140 502.7 453 54.7
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 7.5e-139 499.2 491 51.7
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 3.7e-138 496.9 449 54.3
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.4e-137 495.0 449 53.7
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 3.1e-137 493.8 449 53.5
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 9.2e-137 492.3 449 53.7
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 9.2e-137 492.3 459 53.6
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.6e-136 491.5 1092 30.8
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.6e-136 491.5 470 52.1
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 6.6e-135 486.1 459 52.5
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 4.3e-134 483.4 734 41.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 5.6e-134 483.0 1077 32.2
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 4.4e-131 473.4 729 44.2
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 5.8e-131 473.0 457 51.0
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.9e-129 468.0 459 53.8
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 2.4e-129 467.6 356 61.8
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.7e-128 464.2 338 64.2
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 3.0e-127 460.7 469 51.4
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 3.0e-127 460.7 351 62.7
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.5e-126 458.4 349 63.3
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 1.2e-117 428.7 468 49.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 1.2e-117 428.7 468 49.1
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 3.6e-117 427.2 354 60.2
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 2.2e-114 417.9 687 38.9
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.4e-113 415.2 498 45.2
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 3.3e-110 404.1 300 65.3
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.2e-107 395.6 469 42.2
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 2.2e-106 391.3 372 55.1
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 6.2e-101 373.2 438 43.8
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 6.4e-98 363.2 990 28.8
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 9.3e-97 359.4 635 36.2
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.7e-95 355.1 363 51.0
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.1e-92 345.9 461 42.3
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.0e-87 329.3 367 48.2
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.9e-78 298.5 257 57.2
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 7.4e-78 296.6 317 48.9
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 6.3e-69 266.9 282 47.9
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.4e-65 255.8 168 68.5
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 5.0e-58 230.7 468 34.2
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.6e-54 218.4 208 50.0
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.4e-52 211.8 196 56.1
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.0e-50 206.5 179 57.0
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 2.6e-46 191.8 183 52.5
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-39 169.5 117 63.2
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.1e-28 133.3 320 32.8
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.7e-26 125.9 207 39.6
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 8.0e-24 117.1 146 41.8
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.3e-18 99.0 62 64.5
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 7.8e-11 73.9 79 46.8
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 4.0e-07 61.6 123 37.4
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 8.9e-07 60.5 42 52.4


User provided reference genes

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