Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.6e-155 551.6 290 100.0
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 3.2e-34 149.8 292 40.1
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.3e-32 144.4 218 43.1
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.9e-32 142.9 228 43.4
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.6e-32 142.1 218 42.7
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 8.6e-32 141.7 218 42.7
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 2.5e-31 140.2 232 43.5
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 3.6e-30 136.3 209 42.1
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 3.6e-30 136.3 292 36.6
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 4.7e-30 136.0 228 43.9
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.4e-29 134.4 271 40.2
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.4e-29 134.4 264 38.3
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.8e-29 134.0 215 41.4
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 4.0e-29 132.9 215 40.5
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 1.2e-28 131.3 210 42.9
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 2.0e-28 130.6 322 36.0
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 2.6e-28 130.2 301 35.9
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 9.9e-28 128.3 231 39.4
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 9.9e-28 128.3 204 41.7
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.3e-27 127.9 197 44.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.3e-27 127.9 257 38.1
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 2.2e-27 127.1 219 42.0
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 4.9e-27 125.9 208 37.5
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 4.9e-27 125.9 223 38.6
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 4.9e-27 125.9 287 35.5
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 8.4e-27 125.2 208 37.5
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.1e-26 124.8 268 38.1
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.9e-26 124.0 297 36.4
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 2.4e-26 123.6 284 39.4
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 3.2e-26 123.2 205 38.5
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.4e-26 122.5 230 39.1
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 7.1e-26 122.1 228 41.2
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 9.2e-26 121.7 204 44.1
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 1.2e-25 121.3 210 41.4
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.6e-25 120.9 320 34.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.5e-25 119.8 232 37.9
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 6.0e-25 119.0 318 34.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.7e-24 117.5 313 35.5
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 3.0e-24 116.7 191 45.0
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.9e-24 116.3 225 39.6
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 6.6e-24 115.5 297 35.4
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 8.6e-24 115.2 238 39.1
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 1.1e-23 114.8 220 40.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.5e-23 114.4 166 40.4
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 4.3e-23 112.8 220 37.7
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 9.6e-23 111.7 218 37.2
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.2e-22 111.3 227 41.0
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.8e-22 110.2 290 31.0
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.8e-22 110.2 192 38.0
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 4.7e-22 109.4 192 38.0
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.8e-21 107.5 313 31.0
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.8e-21 107.5 315 30.8
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.4e-21 107.1 193 37.3
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 5.2e-21 105.9 210 35.7
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.9e-21 105.5 243 33.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 8.9e-21 105.1 194 36.6
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 8.9e-21 105.1 317 30.9
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 1.2e-20 104.8 246 35.0
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 2.0e-20 104.0 194 33.0
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.6e-20 103.6 233 34.3
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.4e-20 103.2 226 33.6
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.4e-20 103.2 226 33.6
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.4e-20 102.8 244 33.6
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 5.8e-20 102.4 233 34.3
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 5.8e-20 102.4 190 35.3
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.3e-19 101.3 199 37.2
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.3e-19 101.3 199 31.7
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.7e-19 100.9 238 37.0
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 2.9e-19 100.1 184 38.0
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.9e-19 100.1 223 32.7
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.9e-19 99.4 248 33.5
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.9e-19 99.4 248 33.5
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 8.4e-19 98.6 312 30.1
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.1e-18 98.2 196 32.1
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.4e-18 97.8 213 39.9
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.9e-18 97.4 270 32.2
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.9e-18 97.4 265 32.5
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 3.2e-18 96.7 248 33.9
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 7.1e-18 95.5 201 33.8
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 7.1e-18 95.5 197 36.0
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.6e-17 94.4 211 32.2
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.1e-17 94.0 251 33.5
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.1e-17 94.0 190 34.2
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 2.7e-17 93.6 223 32.7
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 3.5e-17 93.2 224 31.7
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.5e-17 93.2 265 31.7
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.5e-17 93.2 223 31.8
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 4.6e-17 92.8 265 31.7
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 6.0e-17 92.4 247 32.8
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.8e-17 92.0 211 31.8
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.0e-16 91.7 250 31.2
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.3e-16 91.3 234 32.9
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.7e-16 90.9 196 34.2
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 2.3e-16 90.5 202 33.2
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 3.9e-16 89.7 198 33.8
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.9e-16 89.7 307 34.5
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 8.7e-16 88.6 233 31.3
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.5e-15 87.8 182 39.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.9e-15 87.4 216 33.8
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.5e-15 87.0 205 33.2
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 2.5e-15 87.0 205 39.5
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 9.6e-15 85.1 195 33.8
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.3e-14 84.7 167 41.3
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.6e-14 84.3 300 29.0
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.8e-14 83.6 200 34.5
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.8e-14 82.8 165 33.9
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.8e-14 82.8 165 33.9
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.8e-14 82.8 181 32.0
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 6.2e-14 82.4 189 32.8
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.1e-13 81.6 263 28.5
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.4e-13 81.3 257 32.3
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.4e-13 81.3 227 30.8
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 2.4e-13 80.5 159 35.8
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 3.1e-13 80.1 193 34.7
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 5.3e-13 79.3 193 35.8
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 9.0e-13 78.6 232 28.9
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 9.0e-13 78.6 203 31.0
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.7e-11 74.3 192 32.3
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.7e-11 74.3 192 32.3
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.7e-11 74.3 238 31.9
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 2.2e-11 73.9 192 32.3
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 2.2e-11 73.9 192 32.3
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 2.2e-11 73.9 192 31.8
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.2e-11 73.9 263 30.0
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.9e-11 73.6 195 31.3
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 3.8e-11 73.2 238 31.9
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 4.9e-11 72.8 195 29.7
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 8.4e-11 72.0 176 31.8
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.9e-10 70.9 195 28.2
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.9e-10 70.9 197 32.5
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 2.4e-10 70.5 216 30.6
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 3.2e-10 70.1 274 27.4
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 4.2e-10 69.7 193 30.6
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 4.2e-10 69.7 78 47.4
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 5.4e-10 69.3 244 31.1
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 7.1e-10 68.9 195 29.2
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 9.3e-10 68.6 191 29.8
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 9.3e-10 68.6 196 31.6
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 1.2e-09 68.2 192 33.3
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.6e-09 67.8 197 31.0
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 3.5e-09 66.6 81 45.7
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.3e-08 64.7 208 27.9
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 2.3e-08 63.9 238 29.8
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.0e-08 63.5 256 28.9
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 6.7e-08 62.4 233 30.0
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 3.3e-07 60.1 246 28.9
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 7.4e-07 58.9 238 26.9
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 9.6e-07 58.5 336 26.2
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 3.7e-06 56.6 163 29.4


User provided reference genes

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