Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 0.0e+00 1078.9 552 100.0
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.5e-263 912.5 550 83.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.3e-262 909.4 550 83.1
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 4.9e-262 907.5 549 82.3
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 4.2e-261 904.4 559 81.8
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 4.2e-261 904.4 549 82.0
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 3.0e-259 898.3 551 81.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 5.1e-259 897.5 550 81.6
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 8.7e-259 896.7 550 82.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 5.7e-258 894.0 550 81.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 2.8e-257 891.7 549 80.7
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 6.9e-256 887.1 550 81.5
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.5e-255 885.9 569 78.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 4.5e-255 884.4 566 79.2
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 8.4e-254 880.2 549 78.9
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.2e-252 876.3 574 77.5
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.6e-252 875.9 594 75.4
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 3.5e-252 874.8 665 70.4
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 4.6e-252 874.4 551 78.8
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.0e-251 873.2 550 79.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.3e-251 872.8 550 79.3
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.3e-251 872.1 554 79.2
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 3.0e-251 871.7 549 78.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.0e-251 871.7 579 76.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 6.7e-251 870.5 549 78.7
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.5e-250 869.4 555 79.3
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.3e-250 868.2 550 78.7
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 5.7e-250 867.5 550 78.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 7.4e-250 867.1 555 77.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 2.2e-249 865.5 562 78.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.8e-249 865.1 550 78.2
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 2.8e-249 865.1 573 76.6
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 6.9e-248 860.5 556 77.5
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.2e-247 859.8 533 80.3
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 5.9e-247 857.4 549 77.8
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 7.7e-247 857.1 552 78.6
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.7e-246 855.9 546 78.4
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.2e-246 855.5 523 81.5
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 6.5e-246 854.0 560 77.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 6.5e-246 854.0 597 73.5
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 5.5e-245 850.9 565 76.3
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.2e-244 849.7 577 74.7
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 6.1e-244 847.4 550 78.4
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 7.9e-244 847.0 551 77.5
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 5.1e-243 844.3 555 76.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 6.7e-243 844.0 546 77.7
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.1e-242 843.2 596 73.3
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.1e-242 843.2 553 77.0
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.7e-241 839.3 551 76.2
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 4.8e-241 837.8 551 77.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 6.3e-241 837.4 551 77.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.1e-240 836.6 529 79.0
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 4.1e-240 834.7 549 75.8
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 9.1e-240 833.6 551 76.8
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 2.6e-239 832.0 547 76.1
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.7e-238 829.3 555 75.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.8e-238 828.2 549 76.5
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 6.5e-238 827.4 575 75.0
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 5.5e-237 824.3 555 74.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 7.2e-237 823.9 554 75.3
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.2e-236 823.2 556 74.3
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.6e-236 822.8 491 81.7
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 8.8e-235 817.0 587 72.1
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.1e-234 816.6 596 71.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 5.7e-234 814.3 537 76.5
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.4e-232 808.9 549 75.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 9.1e-232 807.0 554 73.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.5e-231 805.1 552 73.9
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.3e-230 803.1 537 74.9
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.7e-230 802.7 558 73.1
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 5.0e-230 801.2 526 77.4
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.2e-228 796.6 482 80.5
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 3.0e-227 792.0 557 72.2
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 8.8e-227 790.4 527 74.4
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.5e-226 789.6 563 71.4
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 8.2e-225 783.9 462 83.1
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.0e-224 780.8 609 68.3
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.3e-222 776.5 521 75.8
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 5.0e-222 774.6 493 79.1
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 7.2e-221 770.8 538 73.4
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.8e-219 766.1 561 71.3
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.3e-217 760.0 491 78.4
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 2.7e-215 752.3 551 71.1
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.9e-214 748.8 547 71.5
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.1e-213 746.9 443 81.9
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.2e-211 738.0 587 66.6
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.1e-208 730.3 483 76.0
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.3e-206 722.6 498 74.9
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 3.4e-202 708.8 489 72.0
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 4.1e-200 701.8 533 65.9
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 9.2e-200 700.7 484 73.3
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 5.9e-199 698.0 440 76.8
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.9e-199 698.0 511 67.3
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 9.2e-192 674.1 556 64.9
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 6.8e-187 657.9 516 68.2
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 2.0e-186 656.4 575 61.7
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 5.8e-186 654.8 485 64.9
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.2e-184 649.0 425 73.4
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.5e-183 645.6 538 61.7
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.9e-181 639.8 553 59.3
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 2.0e-178 629.8 423 73.3
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.6e-175 620.2 469 68.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-170 604.0 549 59.9
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 3.5e-167 592.4 340 87.9
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 5.6e-165 585.1 455 68.6
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 3.3e-157 559.3 486 58.2
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.0e-154 550.1 372 76.9
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.7e-153 547.0 490 57.3
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.6e-148 530.4 322 82.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.1e-142 508.8 322 78.9
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 3.2e-136 489.6 293 85.3
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.3e-133 479.6 481 47.6
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 5.7e-117 425.6 271 80.1
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.2e-113 413.7 443 53.0
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.4e-107 394.4 259 75.7
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.6e-106 391.0 388 58.2
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.3e-102 377.1 228 82.9
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 5.0e-89 332.8 205 81.0
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 9.5e-88 328.6 210 77.1
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 8.3e-84 315.5 209 72.2
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 2.0e-82 310.8 210 73.8
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.3e-81 307.4 208 72.1
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 8.0e-79 298.9 188 79.3
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.7e-73 281.2 472 37.1
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.1e-62 243.8 137 78.8
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 6.0e-58 229.6 247 54.3
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.5e-56 224.9 139 79.9
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.1e-51 208.8 181 59.1
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 2.7e-50 204.1 430 33.3
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.9e-40 171.4 89 86.5
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.9e-40 171.4 89 86.5
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 4.3e-40 170.2 356 34.6
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 9.0e-38 162.5 134 61.9
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.8e-36 157.1 146 59.6
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.8e-31 141.0 114 66.7
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 6.2e-31 139.8 123 61.0
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.7e-25 119.8 69 82.6
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.6e-23 115.2 66 87.9
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 2.8e-23 114.4 155 47.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.2e-23 112.8 64 87.5
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 3.4e-21 107.5 145 46.2
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 3.8e-20 104.0 68 76.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.2e-19 100.9 119 48.7
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 7.2e-19 99.8 52 88.5
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.8e-17 95.1 119 45.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.8e-17 95.1 84 56.0
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 6.7e-17 93.2 57 78.9
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 9.7e-16 89.4 110 50.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.8e-14 85.1 84 58.3
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.8e-12 77.4 58 67.2
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 7.9e-10 69.7 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 6.7e-09 66.6 46 71.7
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.3e-07 62.4 45 64.4
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 2.8e-07 61.2 72 48.6
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 1.1e-06 59.3 51 52.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 2.4e-06 58.2 43 62.8
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 5.3e-06 57.0 132 33.3


User provided reference genes

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