Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 4.3e-56 221.1 111 100.0
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 1.9e-35 152.5 98 77.6
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 7.9e-18 94.0 80 57.5
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 1.8e-17 92.8 74 62.2
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 3.0e-17 92.0 88 53.4
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 3.0e-17 92.0 93 50.5
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 3.9e-17 91.7 84 53.6
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 3.9e-17 91.7 93 50.5
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 5.1e-17 91.3 88 53.4
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 5.1e-17 91.3 80 57.5
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 5.1e-17 91.3 76 60.5
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.5e-16 89.7 76 57.9
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.5e-16 89.0 91 52.7
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.5e-16 89.0 74 60.8
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 3.3e-16 88.6 87 51.7
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 4.3e-16 88.2 76 57.9
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 5.7e-16 87.8 80 55.0
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 9.7e-16 87.0 74 56.8
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 9.7e-16 87.0 91 51.6
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 9.7e-16 87.0 90 52.2
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 1.3e-15 86.7 89 51.7
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 1.3e-15 86.7 84 56.0
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.3e-15 86.7 76 56.6
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.6e-15 86.3 80 53.8
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 1.6e-15 86.3 76 55.3
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 2.2e-15 85.9 76 56.6
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 2.8e-15 85.5 82 54.9
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.8e-15 85.5 77 58.4
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 2.8e-15 85.5 104 50.0
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 3.7e-15 85.1 80 52.5
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 4.8e-15 84.7 73 57.5
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 6.3e-15 84.3 91 52.7
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 6.3e-15 84.3 78 55.1
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 6.3e-15 84.3 89 52.8
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 6.3e-15 84.3 77 58.4
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 8.2e-15 84.0 103 49.5
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 8.2e-15 84.0 74 55.4
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 1.4e-14 83.2 68 58.8
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 1.4e-14 83.2 82 53.7
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 1.8e-14 82.8 97 44.3
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 2.4e-14 82.4 76 51.3
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 3.1e-14 82.0 84 53.6
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 4.1e-14 81.6 82 53.7
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 4.1e-14 81.6 82 53.7
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 4.1e-14 81.6 71 53.5
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 4.1e-14 81.6 92 48.9
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 4.1e-14 81.6 73 57.5
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 5.3e-14 81.3 75 53.3
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 5.3e-14 81.3 81 53.1
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 6.9e-14 80.9 83 49.4
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 6.9e-14 80.9 78 55.1
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 9.0e-14 80.5 82 52.4
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 9.0e-14 80.5 80 53.8
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 1.2e-13 80.1 108 44.4
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 1.2e-13 80.1 75 56.0
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 1.2e-13 80.1 72 54.2
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 2.6e-13 79.0 90 47.8
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 3.4e-13 78.6 89 49.4
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 4.5e-13 78.2 69 53.6
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 5.9e-13 77.8 70 54.3
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 7.6e-13 77.4 77 50.6
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 7.6e-13 77.4 74 52.7
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 1.3e-12 76.6 84 47.6
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 1.3e-12 76.6 81 45.7
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.3e-12 76.6 83 47.0
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 1.3e-12 76.6 88 45.5
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 1.7e-12 76.3 77 50.6
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 1.7e-12 76.3 60 61.7
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 2.2e-12 75.9 89 44.9
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 2.9e-12 75.5 89 44.9
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 2.9e-12 75.5 70 50.0
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 2.9e-12 75.5 66 54.5
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 2.9e-12 75.5 97 43.3
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 3.8e-12 75.1 95 40.0
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 3.8e-12 75.1 74 51.4
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 5.0e-12 74.7 89 48.3
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 6.5e-12 74.3 80 46.2
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 6.5e-12 74.3 69 50.7
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 6.5e-12 74.3 86 45.3
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 6.5e-12 74.3 88 48.9
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 8.5e-12 73.9 89 43.8
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 8.5e-12 73.9 69 50.7
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 8.5e-12 73.9 73 52.1
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.1e-11 73.6 81 50.6
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 1.4e-11 73.2 80 43.8
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 1.4e-11 73.2 74 50.0
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 1.4e-11 73.2 76 52.6
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 2.5e-11 72.4 80 43.8
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 3.2e-11 72.0 77 49.4
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 3.2e-11 72.0 70 50.0
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 4.2e-11 71.6 96 41.7
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 4.2e-11 71.6 72 47.2
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 5.5e-11 71.2 82 47.6
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 5.5e-11 71.2 70 50.0
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 7.2e-11 70.9 83 45.8
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 9.4e-11 70.5 91 44.0
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 9.4e-11 70.5 81 49.4
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 9.4e-11 70.5 62 54.8
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.6e-10 69.7 77 49.4
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 1.6e-10 69.7 82 46.3
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 2.7e-10 68.9 93 44.1
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 2.7e-10 68.9 89 44.9
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 6.1e-10 67.8 93 43.0
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 7.9e-10 67.4 92 40.2
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 1.0e-09 67.0 71 45.1
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.0e-09 67.0 81 45.7
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 1.4e-09 66.6 84 47.6
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 1.4e-09 66.6 81 48.1
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.4e-09 66.6 81 45.7
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.4e-09 66.6 81 45.7
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 1.4e-09 66.6 72 48.6
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 1.8e-09 66.2 95 38.9
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.3e-09 65.9 76 47.4
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 5.1e-09 64.7 91 38.5
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 5.1e-09 64.7 71 43.7
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 5.1e-09 64.7 82 45.1
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 8.8e-09 63.9 90 40.0
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 8.8e-09 63.9 90 38.9
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 8.8e-09 63.9 90 38.9
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 8.8e-09 63.9 73 43.8
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 1.1e-08 63.5 58 51.7
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 1.1e-08 63.5 58 51.7
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.1e-08 63.5 59 52.5
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 1.5e-08 63.2 72 44.4
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 1.9e-08 62.8 85 37.6
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 1.9e-08 62.8 67 50.7
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 4.3e-08 61.6 76 44.7
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 4.3e-08 61.6 82 36.6
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 7.4e-08 60.8 46 58.7
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 9.7e-08 60.5 78 42.3
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 9.7e-08 60.5 78 42.3
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 3.7e-07 58.5 94 39.4
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 8.2e-07 57.4 52 53.8
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 4.1e-06 55.1 43 62.8
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 4.1e-06 55.1 43 62.8
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 5.3e-06 54.7 74 40.5
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 5.3e-06 54.7 80 37.5
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 6.9e-06 54.3 41 63.4
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 6.9e-06 54.3 41 63.4
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 6.9e-06 54.3 67 43.3


User provided reference genes

Program Settings