Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 7.6e-36 153.3 77 100.0
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 3.0e-16 88.2 51 90.2
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 3.0e-16 88.2 55 81.8
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 3.9e-16 87.8 54 87.0
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 1.9e-15 85.5 54 81.5
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.5e-15 85.1 54 79.6
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.5e-15 85.1 54 81.5
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.5e-15 85.1 54 79.6
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.5e-15 85.1 54 81.5
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 4.3e-15 84.3 54 81.5
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 4.3e-15 84.3 54 81.5
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 7.4e-15 83.6 54 79.6
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 7.4e-15 83.6 47 91.5
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 9.7e-15 83.2 46 93.5
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 1.6e-14 82.4 54 79.6
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 1.6e-14 82.4 54 79.6
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.6e-14 82.4 54 79.6
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 2.2e-14 82.0 47 87.2
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 2.8e-14 81.6 54 79.6
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 2.8e-14 81.6 54 77.8
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 2.8e-14 81.6 49 83.7
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.8e-14 81.6 54 79.6
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 2.8e-14 81.6 54 79.6
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.8e-14 81.6 54 79.6
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 3.7e-14 81.3 54 77.8
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 3.7e-14 81.3 47 87.2
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 4.8e-14 80.9 54 75.9
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 4.8e-14 80.9 52 78.8
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 6.3e-14 80.5 46 89.1
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 6.3e-14 80.5 54 77.8
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 6.3e-14 80.5 48 83.3
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 6.3e-14 80.5 54 77.8
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 8.2e-14 80.1 54 75.9
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 1.1e-13 79.7 47 85.1
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.1e-13 79.7 46 89.1
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 1.4e-13 79.3 54 75.9
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 2.4e-13 78.6 54 75.9
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 2.4e-13 78.6 46 87.0
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 2.4e-13 78.6 46 87.0
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 3.1e-13 78.2 47 83.0
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 3.1e-13 78.2 46 87.0
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 5.3e-13 77.4 46 84.8
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 5.3e-13 77.4 46 84.8
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 5.3e-13 77.4 46 84.8
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 5.3e-13 77.4 55 78.2
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 6.9e-13 77.0 46 84.8
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 9.1e-13 76.6 54 74.1
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 9.1e-13 76.6 49 81.6
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 1.5e-12 75.9 48 79.2
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.5e-12 75.9 54 72.2
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.0e-12 75.5 54 70.4
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 2.6e-12 75.1 55 74.5
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 2.6e-12 75.1 54 74.1
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 2.6e-12 75.1 45 84.4
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 2.6e-12 75.1 48 77.1
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 3.4e-12 74.7 48 77.1
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 4.5e-12 74.3 54 75.9
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 4.5e-12 74.3 54 70.4
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 5.9e-12 73.9 45 82.2
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 7.7e-12 73.6 54 70.4
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 1.0e-11 73.2 44 81.8
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 1.0e-11 73.2 54 72.2
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.3e-11 72.8 54 72.2
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.3e-11 72.8 48 77.1
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-11 72.8 54 72.2
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-11 72.8 48 77.1
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 1.7e-11 72.4 54 68.5
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.7e-11 72.4 50 72.0
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 1.7e-11 72.4 45 80.0
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 1.7e-11 72.4 44 84.1
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 2.2e-11 72.0 49 81.6
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 2.2e-11 72.0 54 68.5
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 2.2e-11 72.0 54 64.8
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 2.9e-11 71.6 46 82.6
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.9e-11 71.6 48 75.0
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.9e-11 71.6 54 66.7
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 3.8e-11 71.2 54 68.5
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.8e-11 71.2 54 70.4
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 3.8e-11 71.2 41 87.8
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 3.8e-11 71.2 54 68.5
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 5.0e-11 70.9 50 70.0
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 5.0e-11 70.9 38 94.7
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 5.0e-11 70.9 44 81.8
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 77.6
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 79.6
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 79.6
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 79.6
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 79.6
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 6.5e-11 70.5 49 79.6
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 6.5e-11 70.5 49 79.6
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 6.5e-11 70.5 49 79.6
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 79.6
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 79.6
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 6.5e-11 70.5 49 77.6
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 6.5e-11 70.5 54 66.7
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 6.5e-11 70.5 54 75.9
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 8.5e-11 70.1 46 82.6
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 8.5e-11 70.1 46 82.6
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 1.4e-10 69.3 46 76.1
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 1.4e-10 69.3 54 64.8
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 1.4e-10 69.3 54 64.8
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.9e-10 68.9 54 74.1
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 1.9e-10 68.9 54 74.1
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 1.9e-10 68.9 46 84.8
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 1.9e-10 68.9 46 82.6
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 1.9e-10 68.9 54 64.8
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.9e-10 68.9 46 82.6
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 1.9e-10 68.9 43 81.4
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 2.5e-10 68.6 54 66.7
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 2.5e-10 68.6 54 66.7
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.5e-10 68.6 69 60.9
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.5e-10 68.6 69 60.9
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 3.2e-10 68.2 38 89.5
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 3.2e-10 68.2 53 67.9
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 3.2e-10 68.2 54 72.2
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 4.2e-10 67.8 53 69.8
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 5.5e-10 67.4 39 89.7
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 5.5e-10 67.4 38 92.1
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 5.5e-10 67.4 54 68.5
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 7.2e-10 67.0 54 72.2
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 7.2e-10 67.0 60 66.7
SGA_v2.0_scaffold91G28002 Striga asiatica HOM05D002454 ORTHO05D002581 7.2e-10 67.0 36 94.4
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 9.4e-10 66.6 43 79.1
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 1.6e-09 65.9 38 89.5
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 2.1e-09 65.5 51 68.6
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 2.1e-09 65.5 36 91.7
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 2.1e-09 65.5 46 78.3
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 2.1e-09 65.5 39 87.2
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 2.1e-09 65.5 40 85.0
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.1e-09 65.5 46 78.3
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.1e-09 65.5 55 65.5
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 2.7e-09 65.1 43 76.7
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 2.7e-09 65.1 45 73.3
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 3.6e-09 64.7 41 85.4
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 6.1e-09 63.9 37 83.8
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 6.1e-09 63.9 38 84.2
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 6.1e-09 63.9 54 63.0
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 1.0e-08 63.2 45 66.7
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 1.0e-08 63.2 53 67.9
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.4e-08 62.8 50 70.0
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 1.4e-08 62.8 46 69.6
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 1.8e-08 62.4 40 80.0
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 2.3e-08 62.0 39 84.6
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 2.3e-08 62.0 45 71.1
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 3.0e-08 61.6 44 70.5
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 3.0e-08 61.6 45 64.4
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 3.0e-08 61.6 45 64.4
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 3.0e-08 61.6 45 64.4
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 3.0e-08 61.6 45 64.4
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 3.0e-08 61.6 45 64.4
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 3.0e-08 61.6 45 71.1
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 3.0e-08 61.6 41 75.6
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 5.1e-08 60.8 33 93.9
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 6.7e-08 60.5 44 68.2
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.6e-07 58.5 54 51.9
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 3.3e-07 58.2 47 63.8
GSVIVG01031131001 Vitis vinifera HOM05D002454 ORTHO05D002581 4.4e-07 57.8 32 93.8
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 5.7e-07 57.4 46 65.2
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 5.7e-07 57.4 47 63.8
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 7.4e-07 57.0 50 64.0
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 1.7e-06 55.8 39 79.5
Sed0004084 Sechium edule HOM05D002454 ORTHO05D002581 1.7e-06 55.8 39 66.7
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 2.2e-06 55.5 51 60.8
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 2.8e-06 55.1 57 61.4
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 2.8e-06 55.1 57 61.4
CsaV3_6G002150 Cucumis sativus L. HOM05D002454 ORTHO05D002581 2.8e-06 55.1 36 69.4
MELO3C019992.2 Cucumis melo HOM05D002454 ORTHO05D002581 3.7e-06 54.7 36 69.4
Duzib106G0273 Durio zibethinus HOM05D002454 ORTHO05D002581 6.3e-06 53.9 44 61.4
CSS0016666 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 8.2e-06 53.5 41 58.5
GSVIVG01032718001 Vitis vinifera HOM05D002454 ORTHO05D002581 8.2e-06 53.5 40 60.0


User provided reference genes

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