Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 4.2e-57 224.6 120 100.0
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 4.2e-57 224.6 120 100.0
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 5.0e-42 174.5 120 74.2
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 8.5e-42 173.7 120 71.7
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 4.7e-40 167.9 121 71.9
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.3e-37 159.8 125 71.2
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 2.2e-37 159.1 121 70.2
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 2.2e-37 159.1 121 72.7
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 3.7e-37 158.3 120 69.2
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 4.8e-37 157.9 113 74.3
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 4.8e-37 157.9 121 67.8
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 8.2e-37 157.1 121 68.6
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.1e-36 156.8 121 68.6
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.1e-36 156.8 119 69.7
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.1e-36 156.8 124 68.5
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.4e-36 156.4 122 69.7
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.8e-36 156.0 119 71.4
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.8e-36 156.0 119 71.4
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.8e-36 156.0 119 71.4
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.4e-36 155.6 119 68.9
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 2.4e-36 155.6 117 71.8
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 3.1e-36 155.2 121 67.8
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 7.0e-36 154.1 121 66.9
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 9.1e-36 153.7 121 68.6
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 9.1e-36 153.7 118 69.5
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.2e-35 153.3 121 67.8
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.2e-35 153.3 118 69.5
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.5e-35 152.9 121 67.8
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 1.5e-35 152.9 116 71.6
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.0e-35 152.5 121 65.3
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 2.6e-35 152.1 119 68.1
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 3.5e-35 151.8 120 67.5
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 3.5e-35 151.8 117 70.1
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 4.5e-35 151.4 117 69.2
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 4.5e-35 151.4 117 69.2
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 5.9e-35 151.0 114 71.9
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 5.9e-35 151.0 117 70.1
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 7.7e-35 150.6 116 71.6
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 7.7e-35 150.6 115 68.7
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 7.7e-35 150.6 119 68.9
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 7.7e-35 150.6 119 68.9
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.0e-34 150.2 122 67.2
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.0e-34 150.2 121 65.3
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.3e-34 149.8 116 68.1
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 1.7e-34 149.4 116 70.7
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 1.7e-34 149.4 116 70.7
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 1.7e-34 149.4 116 70.7
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 1.7e-34 149.4 116 70.7
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.7e-34 149.4 117 68.4
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 2.9e-34 148.7 116 68.1
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 2.9e-34 148.7 116 72.4
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.8e-34 148.3 119 68.9
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 6.5e-34 147.5 117 69.2
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 1.1e-33 146.7 115 67.8
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.4e-33 146.4 113 69.0
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.9e-33 146.0 122 65.6
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.9e-33 146.0 113 68.1
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.9e-33 146.0 119 64.7
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 113 68.1
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 113 68.1
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 113 68.1
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 4.2e-33 144.8 117 70.1
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 4.2e-33 144.8 114 71.1
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 4.2e-33 144.8 117 70.1
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 4.2e-33 144.8 123 67.5
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 5.5e-33 144.4 122 65.6
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 9.4e-33 143.7 117 69.2
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 1.2e-32 143.3 117 67.5
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.2e-32 143.3 112 67.9
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 1.2e-32 143.3 121 62.8
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 2.1e-32 142.5 121 63.6
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 3.0e-31 138.7 119 65.5
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 3.9e-31 138.3 112 66.1
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 5.2e-31 137.9 121 62.0
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 2.0e-30 136.0 122 60.7
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 4.4e-30 134.8 101 72.3
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 4.4e-30 134.8 118 65.3
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 5.7e-30 134.4 121 58.7
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 9.7e-30 133.7 96 75.0
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 9.7e-30 133.7 121 57.9
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 1.3e-29 133.3 118 58.5
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 1.7e-29 132.9 119 60.5
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 1.7e-29 132.9 121 59.5
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 2.8e-29 132.1 100 72.0
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 2.8e-29 132.1 118 61.9
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 6.3e-29 131.0 101 72.3
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 6.3e-29 131.0 101 72.3
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 6.3e-29 131.0 91 75.8
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 8.2e-29 130.6 108 66.7
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.1e-28 130.2 116 65.5
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 4.1e-28 128.3 96 67.7
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 5.3e-28 127.9 96 74.0
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 9.1e-28 127.1 97 71.1
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 2.0e-27 125.9 97 70.1
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 2.6e-27 125.6 122 57.4
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.5e-27 125.2 112 60.7
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 3.5e-27 125.2 116 62.1
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 1.0e-26 123.6 96 72.9
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 1.0e-26 123.6 96 67.7
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.7e-26 122.9 119 58.0
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 1.7e-26 122.9 91 71.4
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 1.1e-25 120.2 120 58.3
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 4.7e-24 114.8 113 58.4
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 1.0e-23 113.6 115 56.5
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.2e-22 110.2 121 52.9
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.5e-22 109.8 110 52.7
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 3.7e-21 105.1 116 50.0
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 3.7e-21 105.1 98 59.2
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 4.8e-21 104.8 125 52.8
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 4.8e-21 104.8 121 47.9
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.7e-19 99.0 95 57.9
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.7e-19 99.0 95 57.9
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 4.5e-19 98.2 122 54.1
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.0e-18 97.1 82 67.1
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.2e-17 92.0 110 49.1
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.2e-16 90.1 89 58.4
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 1.8e-15 86.3 124 46.0
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 5.2e-07 58.2 52 57.7
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 8.9e-07 57.4 80 41.2
SEGI_26321 Sequoiadendron giganteum HOM05D047374 ORTHO05D008206 1.2e-06 57.0 112 41.1


User provided reference genes

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