Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 4.6e-308 1060.4 552 100.0
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 1.0e-73 282.0 629 36.2
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 5.1e-65 253.1 584 35.4
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 5.6e-64 249.6 587 35.3
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.4e-59 235.0 649 33.0
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.7e-57 228.0 640 31.9
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 6.6e-57 226.1 547 34.7
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 2.8e-55 220.7 534 34.8
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.8e-54 218.0 556 35.1
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 7.6e-53 212.6 553 34.7
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 1.3e-52 211.8 549 33.0
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 3.8e-52 210.3 562 33.6
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.1e-51 208.8 506 33.8
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 9.3e-51 205.7 578 33.6
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 2.3e-49 201.1 572 31.6
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.3e-49 201.1 559 33.8
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 3.9e-49 200.3 585 32.6
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 3.9e-49 200.3 649 31.6
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 6.6e-49 199.5 511 32.5
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 8.7e-49 199.1 508 35.0
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 1.9e-48 198.0 610 31.1
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 4.3e-48 196.8 590 31.7
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 9.6e-48 195.7 563 32.3
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 1.4e-46 191.8 571 31.9
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 4.0e-46 190.3 575 32.9
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 9.0e-46 189.1 552 32.8
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.2e-44 184.5 629 31.8
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.2e-44 184.5 632 30.4
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 2.9e-44 184.1 588 29.9
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 3.2e-43 180.6 555 30.6
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 3.2e-43 180.6 555 30.6
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 7.1e-43 179.5 555 30.1
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 2.7e-42 177.6 583 31.6
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 2.7e-42 177.6 589 31.1
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 3.5e-42 177.2 569 32.2
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.0e-41 175.6 561 29.8
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 2.3e-41 174.5 545 33.0
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 3.0e-41 174.1 502 34.5
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 1.5e-40 171.8 575 30.4
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 1.3e-39 168.7 557 29.3
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 6.2e-39 166.4 549 30.1
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.8e-38 164.9 519 30.4
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 5.3e-38 163.3 611 30.3
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 5.3e-38 163.3 534 30.3
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 5.3e-38 163.3 650 27.5
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 4.5e-37 160.2 527 27.9
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.7e-36 158.3 648 28.5
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 3.8e-36 157.1 537 30.9
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 8.4e-36 156.0 681 27.5
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.1e-35 155.6 542 30.3
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 1.4e-35 155.2 532 29.9
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 1.4e-35 155.2 532 29.9
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 1.4e-35 155.2 532 29.9
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 4.2e-35 153.7 554 30.9
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 7.1e-35 152.9 597 29.1
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 6.0e-34 149.8 550 29.6
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 7.9e-34 149.4 638 27.1
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 1.3e-33 148.7 529 29.9
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 8.7e-33 146.0 413 31.5
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.5e-32 144.4 580 29.5
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 4.3e-32 143.7 537 29.2
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 7.4e-32 142.9 541 29.2
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 1.3e-31 142.1 549 29.5
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 1.6e-31 141.7 538 30.3
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 8.2e-31 139.4 534 30.1
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 1.4e-30 138.7 627 27.9
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 1.8e-30 138.3 548 28.6
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 2.4e-30 137.9 582 29.9
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 5.3e-30 136.7 586 27.3
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 5.3e-30 136.7 613 28.4
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 1.5e-29 135.2 446 28.7
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 4.5e-29 133.7 576 28.0
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 7.6e-29 132.9 531 30.7
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 1.3e-28 132.1 526 31.0
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 2.9e-28 131.0 435 29.2
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 4.9e-28 130.2 578 28.2
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 1.9e-27 128.3 545 28.1
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 1.2e-26 125.6 455 30.3
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 2.1e-26 124.8 168 42.9
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 1.0e-25 122.5 508 28.0
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 3.0e-25 120.9 161 42.9
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 8.7e-25 119.4 371 32.6
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 1.5e-24 118.6 551 28.1
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 9.7e-24 115.9 595 27.2
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 1.3e-23 115.5 339 35.1
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 1.4e-22 112.1 234 35.9
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 1.8e-22 111.7 442 29.6
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 5.3e-22 110.2 540 28.9
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 6.9e-22 109.8 601 25.8
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 9.3e-19 99.4 217 34.6
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 4.6e-18 97.1 569 25.7
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.3e-17 95.5 83 53.0
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 3.0e-17 94.4 315 33.3
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 6.7e-17 93.2 312 33.3
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 2.5e-16 91.3 172 35.5
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 1.7e-15 88.6 560 26.1
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 9.1e-14 82.8 88 50.0
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 1.2e-13 82.4 296 30.1
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 4.2e-11 73.9 180 28.3
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 3.6e-10 70.9 153 32.7
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 3.6e-10 70.9 67 49.3
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 6.1e-10 70.1 67 47.8
TAR633G1503 Trochodendron aralioides HOM05D007342 ORTHO05D009252 5.1e-09 67.0 192 34.9
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 6.7e-09 66.6 406 23.2
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 1.1e-08 65.9 191 30.9
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 2.0e-08 65.1 77 39.0
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 2.6e-08 64.7 76 39.5
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 5.7e-08 63.5 77 37.7
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 5.7e-08 63.5 84 36.9
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 7.4e-08 63.2 77 37.7
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 9.7e-08 62.8 75 37.3
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 1.3e-07 62.4 77 37.7
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 1.3e-07 62.4 77 37.7
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 1.3e-07 62.4 90 33.3
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 1.3e-07 62.4 78 37.2
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 1.7e-07 62.0 319 26.0
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 1.7e-07 62.0 90 32.2
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.7e-07 62.0 90 32.2
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.7e-07 62.0 90 32.2
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.7e-07 62.0 90 32.2
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.7e-07 62.0 90 32.2
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.7e-07 62.0 90 32.2
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 2.2e-07 61.6 78 37.2
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 2.2e-07 61.6 78 37.2
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 2.2e-07 61.6 77 36.4
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.2e-07 61.6 90 32.2
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 3.7e-07 60.8 75 36.0
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 3.7e-07 60.8 75 37.3
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 4.8e-07 60.5 77 36.4
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 4.8e-07 60.5 76 36.8
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 4.8e-07 60.5 67 40.3
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 6.3e-07 60.1 75 34.7
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 6.3e-07 60.1 76 35.5
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 6.3e-07 60.1 76 34.2
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 8.2e-07 59.7 76 34.2
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 8.2e-07 59.7 75 33.3
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 8.2e-07 59.7 75 36.0
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 1.1e-06 59.3 77 35.1
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 1.4e-06 58.9 75 34.7
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 1.8e-06 58.5 77 37.7
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 1.8e-06 58.5 75 36.0
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 2.4e-06 58.2 83 34.9
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 2.4e-06 58.2 75 36.0
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 3.1e-06 57.8 138 29.7
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 3.1e-06 57.8 273 22.3
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 3.1e-06 57.8 75 34.7
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 3.1e-06 57.8 67 37.3
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 4.1e-06 57.4 146 24.7
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 4.1e-06 57.4 146 25.3
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 4.1e-06 57.4 75 34.7
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 5.3e-06 57.0 75 33.3
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 5.3e-06 57.0 146 24.7
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 6.9e-06 56.6 147 24.5
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 9.1e-06 56.2 75 33.3
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 9.1e-06 56.2 74 37.8
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 9.1e-06 56.2 75 34.7


User provided reference genes

Program Settings