Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 4.4e-80 301.2 150 100.0
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 3.4e-16 89.0 54 87.0
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 8.8e-12 74.3 46 82.6
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.5e-11 73.6 46 80.4
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.9e-11 73.2 46 80.4
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.9e-11 73.2 46 80.4
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 2.5e-11 72.8 50 76.0
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 2.5e-11 72.8 70 58.6
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 5.7e-11 71.6 46 78.3
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.4e-11 71.2 46 78.3
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.4e-11 71.2 46 78.3
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 1.3e-10 70.5 45 80.0
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 1.3e-10 70.5 46 78.3
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 1.7e-10 70.1 44 79.5
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.7e-10 70.1 46 78.3
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.2e-10 69.7 44 79.5
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 3.7e-10 68.9 37 91.9
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 4.8e-10 68.6 46 76.1
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 4.8e-10 68.6 36 94.4
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 6.3e-10 68.2 46 76.1
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 6.3e-10 68.2 46 76.1
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 6.3e-10 68.2 46 76.1
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 6.3e-10 68.2 46 73.9
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 8.2e-10 67.8 46 71.7
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 8.2e-10 67.8 46 73.9
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 8.2e-10 67.8 37 89.2
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 1.1e-09 67.4 66 59.1
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 1.1e-09 67.4 46 76.1
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 1.1e-09 67.4 46 76.1
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 1.1e-09 67.4 46 76.1
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 1.1e-09 67.4 46 76.1
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.4e-09 67.0 46 71.7
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 1.4e-09 67.0 39 82.1
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 1.8e-09 66.6 36 91.7
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.8e-09 66.6 36 91.7
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 1.8e-09 66.6 40 82.5
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 2.4e-09 66.2 37 86.5
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.4e-09 66.2 56 66.1
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.4e-09 66.2 56 66.1
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 2.4e-09 66.2 46 73.9
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 2.4e-09 66.2 46 73.9
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 3.1e-09 65.9 46 71.7
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 4.1e-09 65.5 46 71.7
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 5.3e-09 65.1 54 63.0
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 5.3e-09 65.1 36 88.9
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 5.3e-09 65.1 36 88.9
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 6.9e-09 64.7 46 71.7
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 6.9e-09 64.7 37 83.8
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 1.2e-08 63.9 36 86.1
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.2e-08 63.9 36 86.1
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.5e-08 63.5 46 71.7
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.5e-08 63.5 48 68.8
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.5e-08 63.5 47 74.5
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.0e-08 63.2 46 69.6
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 2.6e-08 62.8 47 70.2
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 2.6e-08 62.8 66 53.0
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 2.6e-08 62.8 36 83.3
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 2.6e-08 62.8 36 83.3
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 3.4e-08 62.4 36 83.3
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 3.4e-08 62.4 38 78.9
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 4.5e-08 62.0 39 79.5
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 4.5e-08 62.0 46 67.4
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 4.5e-08 62.0 46 67.4
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 7.7e-08 61.2 47 70.2
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 7.7e-08 61.2 38 76.3
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 1.3e-07 60.5 35 82.9
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.3e-07 60.5 46 67.4
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.7e-07 60.1 46 71.7
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 1.7e-07 60.1 46 65.2
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 2.2e-07 59.7 46 65.2
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 2.2e-07 59.7 46 69.6
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 2.9e-07 59.3 46 73.9
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 2.9e-07 59.3 46 60.9
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.9e-07 59.3 46 65.2
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 3.8e-07 58.9 46 67.4
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.8e-07 58.9 46 67.4
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 3.8e-07 58.9 46 67.4
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 3.8e-07 58.9 35 80.0
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 6.5e-07 58.2 46 65.2
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 6.5e-07 58.2 36 83.3
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 6.5e-07 58.2 40 70.0
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 6.5e-07 58.2 46 63.0
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 6.5e-07 58.2 34 85.3
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 6.5e-07 58.2 48 62.5
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 6.5e-07 58.2 46 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 1.1e-06 57.4 34 79.4
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.1e-06 57.4 46 65.2
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 76.9
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 1.4e-06 57.0 39 79.5
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.4e-06 57.0 39 79.5
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 1.4e-06 57.0 39 79.5
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 79.5
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 1.4e-06 57.0 39 76.9
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 1.4e-06 57.0 46 63.0
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 1.4e-06 57.0 46 63.0
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 1.4e-06 57.0 46 63.0
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.9e-06 56.6 46 71.7
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.9e-06 56.6 40 67.5
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 1.9e-06 56.6 36 83.3
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 1.9e-06 56.6 36 83.3
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 1.9e-06 56.6 46 63.0
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 2.5e-06 56.2 51 62.7
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 2.5e-06 56.2 31 87.1
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 2.5e-06 56.2 34 79.4
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.2e-06 55.8 48 62.5
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 3.2e-06 55.8 48 62.5
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 3.2e-06 55.8 46 63.0
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 4.2e-06 55.5 39 76.9
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 4.2e-06 55.5 36 83.3
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 4.2e-06 55.5 46 65.2
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 5.5e-06 55.1 46 69.6
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 5.5e-06 55.1 46 69.6
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 5.5e-06 55.1 46 69.6
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 7.2e-06 54.7 46 69.6
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 7.2e-06 54.7 48 60.4
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 7.2e-06 54.7 36 72.2
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 7.2e-06 54.7 46 67.4
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 9.4e-06 54.3 46 60.9
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 9.4e-06 54.3 46 60.9
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 9.4e-06 54.3 47 55.3
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.4e-06 54.3 47 55.3
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.4e-06 54.3 47 55.3
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.4e-06 54.3 47 55.3
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.4e-06 54.3 47 55.3
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 9.4e-06 54.3 47 63.8


User provided reference genes

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