Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 4.1e-107 391.3 192 100.0
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 1.8e-62 243.0 257 52.1
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 3.4e-61 238.8 219 58.0
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 4.2e-59 231.9 254 50.4
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 6.1e-58 228.0 253 50.2
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 1.0e-57 227.3 258 50.4
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.8e-57 226.5 253 50.2
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 2.3e-57 226.1 255 49.4
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 3.0e-57 225.7 253 48.2
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 8.8e-57 224.2 252 51.2
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 3.3e-56 222.2 255 48.6
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 4.3e-56 221.9 254 50.4
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 5.7e-56 221.5 251 48.6
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 5.7e-56 221.5 253 46.6
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 5.7e-56 221.5 252 49.2
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 1.3e-55 220.3 242 50.4
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.2e-55 219.5 250 47.2
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 2.2e-55 219.5 257 47.9
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 4.8e-55 218.4 259 50.2
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 8.2e-55 217.6 255 47.8
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 1.1e-54 217.2 271 47.6
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 1.8e-54 216.5 254 49.2
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 5.3e-54 214.9 252 49.2
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 6.9e-54 214.5 253 45.8
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 9.1e-54 214.2 251 49.4
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 1.2e-53 213.8 254 48.8
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.5e-53 213.4 254 46.9
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 1.5e-53 213.4 251 48.6
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 1.5e-53 213.4 252 47.6
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 2.6e-53 212.6 255 49.0
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 3.4e-53 212.2 250 49.6
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 4.5e-53 211.8 251 47.8
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 5.9e-53 211.5 234 51.7
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 7.7e-53 211.1 251 46.2
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 7.7e-53 211.1 256 48.8
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 1.0e-52 210.7 254 48.8
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 2.2e-52 209.5 254 48.0
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 3.8e-52 208.8 250 47.2
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 5.0e-52 208.4 253 46.2
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 5.0e-52 208.4 251 47.4
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 6.5e-52 208.0 242 48.8
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 1.1e-51 207.2 254 46.9
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 1.9e-51 206.5 274 45.3
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 3.2e-51 205.7 261 46.0
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 3.2e-51 205.7 261 45.6
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 3.2e-51 205.7 252 46.8
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 5.5e-51 204.9 253 47.4
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 1.2e-50 203.8 254 45.7
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 2.1e-50 203.0 253 48.2
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.1e-50 201.4 279 41.6
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 1.0e-49 200.7 274 44.2
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.0e-49 200.7 242 45.0
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.0e-49 200.7 248 47.6
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 3.9e-49 198.7 243 48.1
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 3.9e-49 198.7 245 48.6
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 5.1e-49 198.4 265 45.7
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 6.7e-49 198.0 257 45.1
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 5.7e-48 194.9 241 44.8
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 9.7e-48 194.1 249 43.4
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 1.7e-47 193.4 260 45.4
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 2.2e-47 193.0 247 46.6
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 3.7e-47 192.2 234 46.6
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 1.1e-46 190.7 287 41.1
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.8e-46 189.9 252 46.4
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 5.3e-46 188.3 229 48.0
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 1.0e-44 184.1 234 46.6
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 5.0e-44 181.8 251 43.0
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 8.5e-44 181.0 221 47.1
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 1.1e-43 180.6 258 42.2
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 7.2e-43 177.9 252 43.7
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 7.2e-43 177.9 197 52.3
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 8.0e-42 174.5 211 49.8
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 1.3e-39 167.2 247 42.1
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 3.1e-38 162.5 198 47.5
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 2.5e-35 152.9 223 42.6
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 3.2e-35 152.5 211 46.9
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 7.2e-35 151.4 254 39.4
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 6.7e-33 144.8 193 44.6
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 6.3e-31 138.3 250 34.8
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 2.4e-30 136.3 113 62.8
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 2.2e-28 129.8 169 45.0
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.5e-27 127.1 241 34.0
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 2.0e-24 116.7 119 53.8
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 1.1e-22 110.9 210 36.7
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 1.2e-21 107.5 78 65.4
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 2.0e-21 106.7 114 50.0
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 6.6e-20 101.7 108 49.1
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.5e-19 100.5 117 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 1.8e-17 93.6 184 34.2
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 4.9e-15 85.5 256 29.7


User provided reference genes

Program Settings