Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.2e-311 1072.4 562 100.0
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 79.7
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.3e-254 882.9 562 78.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.3e-254 882.9 562 79.2
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 7.3e-253 877.1 562 78.5
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 7.3e-253 877.1 562 78.5
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.6e-252 875.9 562 79.9
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.6e-252 875.9 562 78.6
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 2.1e-252 875.5 562 78.1
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 2.1e-252 875.5 561 79.5
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.1e-251 873.2 562 81.0
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 1.8e-251 872.5 562 78.5
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.8e-251 872.5 562 79.7
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.8e-251 872.5 563 79.4
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 5.2e-251 870.9 601 74.5
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.0e-250 869.0 562 78.3
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 2.9e-249 865.1 562 79.0
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 4.9e-249 864.4 562 79.4
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.1e-248 863.2 562 79.5
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 4.1e-248 861.3 562 77.9
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 7.1e-248 860.5 562 79.2
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 9.2e-248 860.1 562 79.2
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 3.5e-247 858.2 562 79.5
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 7.8e-247 857.1 562 76.9
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 77.6
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 77.4
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 76.5
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.5e-245 852.0 563 76.9
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 3.3e-245 851.7 562 77.6
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 3.3e-245 851.7 562 76.9
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 5.6e-245 850.9 562 78.5
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 2.8e-244 848.6 562 77.8
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 2.8e-244 848.6 562 77.2
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 8.1e-244 847.0 562 77.9
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.1e-243 846.7 562 77.2
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 3.1e-243 845.1 562 78.3
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 5.2e-243 844.3 562 77.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 5.2e-243 844.3 563 76.9
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 8.9e-243 843.6 562 76.7
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 3.4e-242 841.6 562 77.9
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 4.4e-242 841.3 562 78.1
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.3e-241 839.7 558 77.6
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 3.7e-241 838.2 627 70.7
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 4.9e-241 837.8 562 76.2
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.0e-238 830.1 562 75.8
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.0e-238 830.1 562 75.8
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 2.3e-238 828.9 542 78.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.4e-235 819.7 565 75.9
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 5.2e-235 817.8 576 75.3
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.8e-235 817.4 557 76.3
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 1.3e-233 813.1 544 77.6
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.9e-233 811.2 560 75.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 6.4e-233 810.8 562 75.6
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.4e-232 809.7 520 78.7
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.6e-231 806.2 562 73.8
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 7.8e-231 803.9 613 69.8
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.0e-230 803.5 565 73.3
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 2.3e-230 802.4 566 74.7
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 6.6e-230 800.8 542 75.5
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.1e-229 800.0 560 74.1
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 3.6e-228 795.0 562 74.4
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 2.4e-227 792.3 562 73.7
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.9e-227 790.8 542 76.8
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.6e-226 788.9 562 71.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.7e-222 776.2 562 73.1
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 2.3e-222 775.8 513 76.0
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 5.1e-222 774.6 562 71.4
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 4.3e-221 771.5 576 71.2
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 1.3e-220 770.0 643 65.0
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.6e-220 769.6 562 70.8
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 6.2e-220 767.7 515 76.3
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 3.1e-219 765.4 563 71.6
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 5.3e-219 764.6 562 71.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 6.9e-219 764.2 562 70.5
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.6e-218 762.3 563 69.1
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 3.4e-218 761.9 562 71.5
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.7e-217 759.6 563 71.0
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.7e-217 759.6 563 71.0
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.4e-216 756.5 562 70.3
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.4e-216 755.7 562 70.8
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.6e-215 753.1 562 70.1
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.9e-214 748.4 563 70.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 5.1e-214 748.0 562 69.9
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.5e-213 746.5 533 72.4
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 1.8e-211 739.6 577 67.2
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 4.0e-211 738.4 513 73.7
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 6.9e-211 737.6 533 71.3
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 8.4e-209 730.7 562 69.8
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.3e-198 696.0 595 64.2
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.4e-192 676.8 476 73.3
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.5e-181 640.2 455 72.7
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.8e-177 625.5 393 80.7
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 1.5e-176 623.6 433 73.4
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 9.4e-176 620.9 563 58.6
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 6.7e-174 614.8 555 61.4
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 1.5e-173 613.6 563 57.4
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 8.8e-166 587.8 569 55.5
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 9.1e-163 577.8 563 55.2
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 9.8e-157 557.8 570 52.1
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 9.8e-149 531.2 382 72.0
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 4.4e-141 505.8 339 77.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.3e-136 489.6 524 56.1
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 4.0e-134 482.6 306 84.0
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 7.3e-128 461.8 349 70.2
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 1.5e-125 454.1 356 62.4
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.4e-125 452.6 341 68.0
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 3.3e-104 383.3 261 72.8
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 3.3e-88 330.1 548 39.1
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 8.8e-73 278.9 200 69.5
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 2.6e-72 277.3 211 71.1
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 7.4e-64 249.2 200 68.5
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 5.9e-61 239.6 144 77.1
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.2e-58 231.9 180 61.7
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.5e-53 213.8 130 79.2
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 4.8e-47 193.4 162 63.6
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 5.7e-32 143.3 180 48.9
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.3e-31 142.1 90 73.3
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 6.4e-31 139.8 178 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.8e-30 138.3 157 51.6
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.8e-30 138.3 157 51.6
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.7e-28 131.7 90 70.0
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 3.3e-27 127.5 162 47.5
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.1e-26 124.8 131 56.5
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-23 115.5 130 50.8
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.7e-23 114.0 89 66.3
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.3e-20 105.5 57 89.5
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.1e-17 95.9 87 63.2
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 8.3e-15 86.3 81 56.8
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.1e-14 85.9 90 52.2
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.9e-07 60.5 47 78.7
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.4e-07 60.1 47 51.1


User provided reference genes

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