Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0004910 Simmondsia chinensis HOM05D007701 ORTHO05D006440 5.6e-110 401.0 204 100.0
Sc05g0006330 Simmondsia chinensis HOM05D049505 ORTHO05D388905 4.1e-12 75.9 48 77.1
Cfa015502 Carpinus fangiana HOM05D007701 ORTHO05D006440 5.9e-11 72.0 103 51.5
Solyc09g074450.1 Solanum lycopersicum HOM05D007701 ORTHO05D006440 1.0e-10 71.2 113 45.1
QL12p024168 Quercus lobata HOM05D007701 ORTHO05D006440 1.3e-10 70.9 123 40.7
Sopen09g029300 Solanum pennellii HOM05D007701 ORTHO05D006440 1.7e-10 70.5 120 42.5
Haze_01050 Corylus avellana HOM05D007701 ORTHO05D006440 2.2e-10 70.1 93 52.7
PGSC0003DMG400031864 Solanum tuberosum HOM05D007701 ORTHO05D006440 2.2e-10 70.1 120 43.3
CAN.G2895.2 Capsicum annuum HOM05D007701 ORTHO05D006440 5.0e-10 68.9 89 52.8
CAN.G426.28 Capsicum annuum HOM05D007701 ORTHO05D006440 6.5e-10 68.6 95 50.5
Nitab4.5_0002093g0180 Nicotiana tabacum HOM05D000530 ORTHO05D000621 6.5e-10 68.6 78 51.3
CiPaw.07G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 8.5e-10 68.2 118 44.1
Nitab4.5_0004150g0050 Nicotiana tabacum HOM05D007701 ORTHO05D006440 1.9e-09 67.0 103 44.7
COL.COLO4_13938 Corchorus olitorius HOM05D007701 ORTHO05D006440 2.7e-08 63.2 116 44.8
Sopen11g019180 Solanum pennellii HOM05D000047 ORTHO05D000044 6.1e-08 62.0 78 52.6
Phvul.006G160600 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 8.0e-08 61.6 107 42.1
Lalb_Chr02g0143101 Lupinus albus HOM05D007701 ORTHO05D006440 1.4e-07 60.8 84 48.8
Duzib138G0471 Durio zibethinus HOM05D007701 ORTHO05D006440 1.8e-07 60.5 112 44.6
Hma1.2p1_0209F.1_g089060 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 1.8e-07 60.5 140 39.3
Thecc.04G276200 Theobroma cacao HOM05D007701 ORTHO05D006440 1.8e-07 60.5 92 51.1
CiPaw.08G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 3.0e-07 59.7 93 45.2
Ciclev10022800m.g Citrus clementina HOM05D007701 ORTHO05D006440 4.0e-07 59.3 120 41.7
Dinv44434 Davidia involucrata HOM05D007701 ORTHO05D006440 5.2e-07 58.9 100 46.0
Hma1.2p1_0078F.1_g040840 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 6.8e-07 58.5 108 44.4
Duzib151G0788 Durio zibethinus HOM05D007701 ORTHO05D006440 1.5e-06 57.4 124 41.9
Manes.05G068100 Manihot esculenta HOM05D007701 ORTHO05D006440 2.0e-06 57.0 126 38.1
Potri.002G207500 Populus trichocarpa HOM05D007701 ORTHO05D006440 2.6e-06 56.6 116 41.4
SGA_v2.0_scaffold11G05758 Striga asiatica HOM05D007701 ORTHO05D006440 2.6e-06 56.6 127 38.6
CiPaw.02G087100 Carya illinoinensis HOM05D007701 ORTHO05D006440 3.4e-06 56.2 109 39.4
Dinv38332 Davidia involucrata HOM05D007701 ORTHO05D006440 3.4e-06 56.2 111 43.2
Potri.014G135100 Populus trichocarpa HOM05D007701 ORTHO05D006440 3.4e-06 56.2 107 43.0
AL39U10120 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 4.4e-06 55.8 132 40.2
AL4G47520 Arabidopsis lyrata HOM05D011411 ORTHO05D006440 4.4e-06 55.8 132 40.2
CANSAT25G3325 Cannabis sativa HOM05D007701 ORTHO05D006440 4.4e-06 55.8 97 42.3
Duzib212G0358 Durio zibethinus HOM05D007701 ORTHO05D006440 4.4e-06 55.8 112 42.9
Ca_10375_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 5.7e-06 55.5 88 42.0
Gohir.A11G118000 Gossypium hirsutum HOM05D007701 ORTHO05D006440 5.7e-06 55.5 108 41.7
Thhalv10001715m.g Eutrema salsugineum HOM05D011411 ORTHO05D006440 7.5e-06 55.1 131 41.2
Carub.0004s3065 Capsella rubella HOM05D011411 ORTHO05D006440 9.8e-06 54.7 131 39.7
Lalb_Chr15g0087071 Lupinus albus HOM05D007701 ORTHO05D006440 9.8e-06 54.7 112 38.4


User provided reference genes

Program Settings