Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 6.0e-82 307.4 146 100.0
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 1.4e-22 110.2 74 70.3
Medtr2g048470 Medicago truncatula HOM05D006941 ORTHO05D008361 1.7e-20 103.2 81 67.9
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 5.0e-20 101.7 72 70.8
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 3.2e-19 99.0 74 66.2
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 3.0e-17 92.4 72 63.9
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 3.9e-17 92.0 72 65.3
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 1.0e-12 77.4 139 34.5
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.9e-11 73.2 42 81.0
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.9e-11 73.2 42 81.0
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 1.9e-11 73.2 42 81.0
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 1.9e-11 73.2 42 81.0
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 1.9e-11 73.2 42 81.0
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 3.2e-11 72.4 40 85.0
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 3.2e-11 72.4 42 81.0
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 4.2e-11 72.0 42 78.6
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 4.2e-11 72.0 45 75.6
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 4.2e-11 72.0 43 79.1
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 5.5e-11 71.6 42 81.0
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 5.5e-11 71.6 42 81.0
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 9.4e-11 70.9 42 78.6
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 9.4e-11 70.9 42 78.6
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 1.2e-10 70.5 44 75.0
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 1.2e-10 70.5 39 82.1
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 1.6e-10 70.1 40 82.5
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 1.6e-10 70.1 42 78.6
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.6e-10 70.1 42 78.6
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.6e-10 70.1 42 78.6
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.6e-10 70.1 42 78.6
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 1.6e-10 70.1 42 78.6
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 2.1e-10 69.7 42 78.6
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 2.1e-10 69.7 42 78.6
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 3.6e-10 68.9 42 76.2
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 6.1e-10 68.2 42 76.2
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 6.1e-10 68.2 42 76.2
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 6.1e-10 68.2 37 83.8
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 8.0e-10 67.8 39 79.5
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 8.0e-10 67.8 42 78.6
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 8.0e-10 67.8 39 79.5
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 1.0e-09 67.4 41 78.0
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 1.0e-09 67.4 42 76.2
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 1.0e-09 67.4 42 76.2
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 1.0e-09 67.4 42 73.8
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.4e-09 67.0 42 76.2
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 1.4e-09 67.0 42 71.4
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 1.4e-09 67.0 41 70.7
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 1.4e-09 67.0 42 71.4
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.4e-09 67.0 42 71.4
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 2.3e-09 66.2 39 79.5
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 2.3e-09 66.2 37 81.1
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 2.3e-09 66.2 39 74.4
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 3.0e-09 65.9 42 73.8
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 3.0e-09 65.9 40 75.0
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 3.0e-09 65.9 42 73.8
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 3.0e-09 65.9 42 76.2
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 3.0e-09 65.9 42 73.8
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 3.0e-09 65.9 42 73.8
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 3.0e-09 65.9 39 76.9
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 4.0e-09 65.5 42 73.8
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 4.0e-09 65.5 42 73.8
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 4.0e-09 65.5 39 79.5
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 4.0e-09 65.5 37 86.5
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 4.0e-09 65.5 37 86.5
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 4.0e-09 65.5 42 69.0
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 4.0e-09 65.5 36 83.3
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 5.2e-09 65.1 42 71.4
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 5.2e-09 65.1 42 73.8
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 5.2e-09 65.1 37 81.1
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 6.7e-09 64.7 39 74.4
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 6.7e-09 64.7 42 71.4
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 6.7e-09 64.7 41 73.2
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 8.8e-09 64.3 41 73.2
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 8.8e-09 64.3 42 73.8
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 8.8e-09 64.3 42 73.8
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 1.2e-08 63.9 41 73.2
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 1.2e-08 63.9 42 71.4
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 1.2e-08 63.9 39 76.9
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 1.5e-08 63.5 40 72.5
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.5e-08 63.5 46 65.2
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 2.0e-08 63.2 34 85.3
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 2.0e-08 63.2 38 73.7
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 2.6e-08 62.8 42 71.4
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 2.6e-08 62.8 38 78.9
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 2.6e-08 62.8 41 70.7
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 3.3e-08 62.4 39 74.4
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 3.3e-08 62.4 39 74.4
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 3.3e-08 62.4 40 67.5
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 3.3e-08 62.4 41 73.2
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 3.3e-08 62.4 42 71.4
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 3.3e-08 62.4 40 72.5
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 4.4e-08 62.0 39 74.4
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 4.4e-08 62.0 39 74.4
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 4.4e-08 62.0 39 74.4
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 4.4e-08 62.0 40 72.5
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 5.7e-08 61.6 42 71.4
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 5.7e-08 61.6 34 79.4
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 7.5e-08 61.2 41 73.2
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 9.7e-08 60.8 42 69.0
Oeu048197.1 Olea europaea HOM05D010625 ORTHO05D008361 1.3e-07 60.5 41 68.3
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 1.7e-07 60.1 33 78.8
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 2.8e-07 59.3 31 87.1
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 2.8e-07 59.3 38 73.7
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 4.8e-07 58.5 39 69.2
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 4.8e-07 58.5 39 69.2
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 1.8e-06 56.6 34 76.5


User provided reference genes

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