Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 9.8e-117 423.7 250 100.0
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.2e-75 285.4 260 66.5
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 6.5e-60 235.0 260 58.8
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 2.1e-58 229.9 258 57.4
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 4.6e-58 228.8 258 56.2
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.8e-57 226.9 259 55.6
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.8e-57 226.9 258 57.0
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.9e-57 225.7 260 57.3
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.5e-56 223.8 261 55.9
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 2.5e-56 223.0 255 56.1
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.5e-56 223.0 260 56.5
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.7e-56 221.9 259 57.1
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 7.4e-56 221.5 258 55.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 3.7e-55 219.2 257 58.8
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 6.3e-55 218.4 261 55.9
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.8e-54 216.9 259 55.6
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 4.1e-54 215.7 259 54.1
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 6.9e-54 214.9 256 54.7
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 9.0e-54 214.5 259 53.7
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 9.0e-54 214.5 254 54.3
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.5e-53 213.8 259 59.5
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 3.4e-53 212.6 269 52.8
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.4e-53 212.6 260 53.8
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 3.4e-53 212.6 258 54.3
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 2.2e-52 209.9 258 54.3
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.4e-51 207.2 254 57.9
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.4e-51 207.2 259 52.5
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.4e-51 207.2 258 52.7
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.9e-51 206.8 257 51.4
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 2.5e-51 206.5 259 59.1
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 3.2e-51 206.1 253 59.3
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 5.5e-51 205.3 262 52.3
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.3e-51 204.5 259 51.0
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 9.3e-51 204.5 256 52.7
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 3.6e-50 202.6 282 57.8
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 3.6e-50 202.6 265 52.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 4.6e-50 202.2 260 50.0
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 4.6e-50 202.2 270 59.6
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 4.6e-50 202.2 260 58.1
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.6e-50 202.2 260 50.8
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.3e-49 200.7 260 51.5
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.8e-49 200.3 263 53.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 2.3e-49 199.9 263 52.1
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.0e-49 199.5 269 51.3
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 3.9e-49 199.1 259 47.5
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.1e-49 198.7 251 51.4
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 6.7e-49 198.4 251 51.0
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 8.7e-49 198.0 259 49.0
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 8.7e-49 198.0 259 55.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.5e-48 197.2 258 52.3
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.9e-48 196.8 240 53.8
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 5.7e-48 195.3 258 46.1
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.3e-47 194.1 260 57.3
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.6e-47 193.7 252 52.4
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 4.8e-47 192.2 252 49.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 4.8e-47 192.2 245 51.8
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.3e-47 191.8 249 51.4
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.1e-46 191.0 266 51.5
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.1e-46 191.0 262 57.3
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.8e-46 190.3 245 54.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 5.3e-46 188.7 248 49.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.5e-45 187.2 264 49.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.5e-45 187.2 254 52.0
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 4.5e-45 185.7 256 49.2
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 5.9e-45 185.3 248 52.0
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.3e-44 184.1 251 49.4
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.7e-44 183.7 254 49.2
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.2e-44 183.3 254 49.2
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 2.2e-44 183.3 251 49.4
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 2.9e-44 183.0 250 49.2
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.9e-43 180.3 184 58.7
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.2e-43 179.5 260 51.9
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 4.2e-43 179.1 285 46.7
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 5.5e-43 178.7 253 48.2
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 1.6e-42 177.2 260 51.5
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.1e-42 176.8 262 51.1
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 3.6e-42 176.0 248 48.8
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.6e-42 175.6 255 44.7
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.1e-42 175.3 249 45.4
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.4e-41 174.1 230 51.7
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 3.9e-41 172.6 253 49.4
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 6.7e-41 171.8 247 50.6
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 4.4e-40 169.1 247 53.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 7.4e-40 168.3 261 46.7
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 4.8e-39 165.6 273 45.8
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.4e-38 164.1 247 45.7
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 2.4e-38 163.3 246 40.7
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 5.3e-38 162.2 277 44.4
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.5e-37 159.1 256 50.0
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-36 157.5 253 49.0
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.3e-36 157.5 180 48.9
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 6.5e-36 155.2 270 43.0
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.1e-35 154.5 179 49.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-35 154.1 254 52.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.9e-35 153.7 210 49.0
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.2e-35 152.5 260 43.8
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 4.2e-35 152.5 250 46.4
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 5.5e-35 152.1 240 46.7
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 5.5e-35 152.1 257 52.1
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.6e-34 150.6 244 45.5
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.6e-34 150.6 243 44.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 3.6e-34 149.4 235 44.7
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 4.7e-34 149.1 235 45.1
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 4.7e-34 149.1 235 45.1
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 6.1e-34 148.7 252 48.4
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 6.1e-34 148.7 235 44.7
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.3e-33 146.7 239 44.8
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.0e-33 146.4 246 50.4
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.0e-33 146.4 246 50.4
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 3.9e-33 146.0 253 47.8
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 3.9e-33 146.0 243 46.9
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 8.8e-33 144.8 255 49.0
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-32 144.4 248 50.0
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-32 144.4 248 50.0
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.1e-32 144.4 221 48.4
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 3.3e-32 142.9 260 41.5
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 7.4e-32 141.7 179 50.8
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 9.7e-32 141.4 242 44.2
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.8e-31 139.8 251 43.4
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.8e-31 139.8 259 51.0
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.8e-31 139.0 260 46.9
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 8.2e-31 138.3 241 46.9
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 8.2e-31 138.3 241 48.1
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.1e-30 136.0 256 50.8
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 9.1e-30 134.8 250 40.4
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.6e-29 133.3 251 45.0
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.8e-28 129.4 248 46.4
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.5e-28 128.3 258 45.7
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.5e-27 127.5 268 44.0
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-27 127.1 244 50.4
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 9.4e-27 124.8 162 48.1
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.2e-26 124.4 264 43.2
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.8e-25 118.2 178 42.1
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-22 110.9 183 49.7
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.0e-20 104.8 148 54.1
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 3.8e-20 102.8 263 38.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 5.0e-20 102.4 179 38.5
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 2.5e-19 100.1 258 32.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.5e-19 100.1 256 35.5
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.3e-15 85.5 97 50.5
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.4e-14 84.3 81 69.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.5e-11 71.6 97 45.4


User provided reference genes

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