Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.2e-72 276.6 150 100.0
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.4e-62 242.3 150 84.0
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 7.1e-62 240.7 148 83.1
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.2e-61 240.0 150 84.7
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.5e-61 238.4 146 83.6
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 3.0e-60 235.3 148 83.8
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.5e-59 233.0 148 83.8
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.5e-59 233.0 150 82.7
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 82.4
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.5e-59 232.3 148 83.1
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.5e-59 232.3 148 81.8
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 7.3e-59 230.7 147 83.0
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 7.3e-59 230.7 148 81.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 9.5e-59 230.3 148 82.4
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 9.5e-59 230.3 148 82.4
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.2e-58 229.9 144 84.0
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.2e-58 229.9 145 82.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.6e-58 229.6 147 83.7
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.1e-58 229.2 151 80.1
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.1e-58 229.2 151 80.1
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.8e-58 228.8 148 80.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.6e-58 228.4 146 82.9
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 4.7e-58 228.0 145 82.8
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 4.7e-58 228.0 149 81.9
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 6.2e-58 227.6 148 80.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 8.1e-58 227.3 148 79.1
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 8.1e-58 227.3 147 81.6
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.1e-57 226.9 151 79.5
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.1e-57 226.9 139 84.9
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.1e-57 226.9 148 79.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.4e-57 226.5 149 80.5
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.4e-57 226.5 139 84.2
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.4e-57 226.5 144 80.6
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.4e-57 226.5 146 81.5
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.4e-57 226.5 139 84.2
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.8e-57 226.1 145 82.1
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.8e-57 226.1 144 79.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 79.7
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 2.4e-57 225.7 148 79.1
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.4e-57 225.7 142 83.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 3.1e-57 225.3 148 80.4
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.1e-57 225.3 146 78.8
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 3.1e-57 225.3 146 80.1
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 3.1e-57 225.3 146 80.1
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 3.1e-57 225.3 148 79.7
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 3.1e-57 225.3 147 80.3
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.0e-57 224.9 148 79.1
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 4.0e-57 224.9 139 84.2
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 5.2e-57 224.6 145 81.4
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.2e-57 224.6 148 79.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 5.2e-57 224.6 148 78.4
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 5.2e-57 224.6 138 84.1
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 6.8e-57 224.2 148 78.4
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 6.8e-57 224.2 148 78.4
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 6.8e-57 224.2 148 79.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 6.8e-57 224.2 142 82.4
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.2e-56 223.4 150 80.0
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.2e-56 223.4 146 78.1
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.2e-56 223.4 148 79.7
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.2e-56 223.4 144 79.9
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.2e-56 223.4 144 79.9
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 82.0
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 2.6e-56 222.2 142 83.1
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.4e-56 221.5 144 79.2
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 4.4e-56 221.5 144 78.5
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 7.6e-56 220.7 144 78.5
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 7.6e-56 220.7 145 78.6
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 79.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.7e-55 219.5 145 78.6
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.2e-55 219.2 148 77.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 2.2e-55 219.2 148 79.1
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.2e-55 219.2 144 79.2
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.9e-55 218.8 148 79.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 3.8e-55 218.4 142 78.2
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 3.8e-55 218.4 142 78.2
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 3.8e-55 218.4 149 81.2
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.8e-55 218.4 144 78.5
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.8e-55 218.4 144 77.8
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.8e-55 218.4 145 79.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 3.8e-55 218.4 144 78.5
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 4.9e-55 218.0 148 75.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 4.9e-55 218.0 146 78.8
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 6.4e-55 217.6 144 78.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.4e-55 217.6 144 78.5
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.4e-55 217.6 144 77.8
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 8.4e-55 217.2 148 76.4
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-54 216.9 148 79.1
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.9e-54 216.1 144 76.4
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 2.4e-54 215.7 144 76.4
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 7.1e-54 214.2 145 74.5
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.6e-53 213.0 134 83.6
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 2.1e-53 212.6 144 77.1
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.1e-53 212.6 148 73.6
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.6e-53 211.5 146 75.3
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 7.8e-53 210.7 148 75.7
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 7.8e-53 210.7 146 75.3
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 3.0e-52 208.8 148 75.0
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.9e-51 206.1 148 72.3
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 3.3e-51 205.3 142 76.1
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 4.3e-51 204.9 146 74.0
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 4.3e-51 204.9 137 75.2
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 5.6e-51 204.5 140 75.7
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.6e-51 204.5 137 75.2
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 9.6e-51 203.8 146 74.7
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 4.7e-50 201.4 148 71.6
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 6.9e-49 197.6 124 84.7
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.3e-47 193.4 144 69.4
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.2e-47 192.6 150 71.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.9e-47 192.2 144 72.2
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 5.4e-46 188.0 142 67.6
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 9.3e-46 187.2 144 66.7
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 9.3e-46 187.2 142 67.6
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.2e-45 186.8 139 69.1
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.6e-45 186.4 149 68.5
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.1e-45 186.0 138 68.8
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.7e-45 185.7 142 66.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 3.5e-45 185.3 141 68.8
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 3.5e-45 185.3 141 68.8
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 3.5e-45 185.3 141 68.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 6.0e-45 184.5 144 68.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 7.8e-45 184.1 144 68.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 1.3e-44 183.3 118 78.8
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.3e-44 182.6 144 66.0
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.0e-44 182.2 137 70.1
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.1e-44 181.4 120 80.0
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 8.7e-44 180.6 148 64.9
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 5.6e-43 177.9 149 67.1
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.6e-42 176.4 149 66.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.8e-41 172.9 142 66.2
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.8e-41 172.9 142 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 6.9e-41 171.0 144 60.4
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 9.0e-41 170.6 145 62.8
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 6.4e-39 164.5 149 62.4
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 5.4e-38 161.4 138 60.1
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.1e-35 153.7 145 55.9
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.8e-33 146.4 134 60.4
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.5e-32 141.7 132 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.4e-30 136.7 134 53.7
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.9e-28 128.6 139 54.0
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.0e-25 118.6 90 70.0
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 6.9e-25 117.9 108 61.1
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 9.3e-22 107.5 96 61.5
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.0e-20 104.0 136 39.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.6e-18 96.7 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 3.6e-13 79.0 87 48.3
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 2.3e-12 76.3 46 78.3


User provided reference genes

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