Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-48 196.1 97 100.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 5.3e-26 120.9 92 72.8
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.4e-24 113.6 94 63.8
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.2e-23 111.3 91 68.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 7.9e-22 107.1 88 62.5
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 8.7e-21 103.6 90 63.3
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.3e-20 101.7 88 64.8
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.6e-20 100.1 102 56.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.2e-19 97.4 107 55.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.2e-19 97.1 84 63.1
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.1e-18 96.7 122 50.8
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.1e-18 95.1 98 56.1
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 3.1e-18 95.1 84 63.1
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.3e-18 94.4 90 57.8
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 5.3e-18 94.4 92 57.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 9.0e-18 93.6 88 61.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.2e-17 93.2 92 59.8
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 1.2e-17 93.2 86 58.1
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-17 93.2 92 60.9
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-17 93.2 90 62.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.0e-17 92.4 87 57.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.6e-17 92.0 82 62.2
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.4e-17 91.7 89 60.7
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.4e-17 91.7 105 53.3
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 7.6e-17 90.5 92 55.4
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 7.6e-17 90.5 94 51.1
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.0e-16 90.1 101 51.5
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.0e-16 90.1 100 55.0
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.0e-16 90.1 97 56.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.3e-16 89.7 100 54.0
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.3e-16 89.7 100 54.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.7e-16 89.4 90 56.7
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.2e-16 89.0 91 54.9
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.9e-16 88.6 93 50.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.9e-16 88.6 101 52.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 4.9e-16 87.8 89 59.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 4.9e-16 87.8 97 53.6
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.5e-16 87.4 101 52.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 6.5e-16 87.4 98 53.1
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 6.5e-16 87.4 78 59.0
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.1e-15 86.7 86 57.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.9e-15 85.9 97 51.5
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.2e-15 85.1 94 50.0
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.2e-15 85.1 94 50.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 5.5e-15 84.3 92 53.3
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 5.5e-15 84.3 87 58.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 5.5e-15 84.3 102 49.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 9.3e-15 83.6 88 56.8
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 9.3e-15 83.6 89 55.1
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 9.3e-15 83.6 81 59.3
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.1e-14 82.4 99 50.5
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 2.1e-14 82.4 97 50.5
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.1e-14 82.4 87 56.3
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.1e-14 82.4 77 58.4
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.1e-14 82.4 85 55.3
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.7e-14 82.0 92 52.2
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.7e-14 82.0 92 53.3
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.5e-14 81.6 95 53.7
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.5e-14 81.6 88 53.4
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 3.5e-14 81.6 93 53.8
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.5e-14 81.6 98 51.0
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.6e-14 81.3 81 56.8
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.6e-14 81.3 84 53.6
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 4.6e-14 81.3 100 50.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.0e-14 80.9 81 59.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.0e-14 80.9 100 50.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 7.9e-14 80.5 105 49.5
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.9e-14 80.5 87 54.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-14 80.5 89 51.7
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 7.9e-14 80.5 85 57.6
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-13 80.1 86 54.7
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-13 80.1 89 51.7
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.0e-13 80.1 90 51.1
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.0e-13 80.1 98 57.1
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.0e-13 80.1 97 52.6
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.3e-13 79.7 86 53.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-13 79.0 86 52.3
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.3e-13 79.0 90 54.4
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.3e-13 79.0 90 54.4
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.3e-13 79.0 84 58.3
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.3e-13 79.0 84 53.6
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-13 78.6 88 52.3
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-13 78.6 87 54.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-13 78.6 87 54.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.0e-13 78.6 102 50.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.0e-13 78.6 86 54.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.0e-13 78.6 93 50.5
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.0e-13 78.6 92 52.2
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.1e-13 77.8 104 49.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.1e-13 77.8 87 51.7
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.1e-13 77.8 88 53.4
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.1e-13 77.8 84 58.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.7e-13 77.4 86 52.3
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.7e-13 77.4 86 52.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 6.7e-13 77.4 82 54.9
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.7e-13 77.0 100 50.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 8.7e-13 77.0 97 52.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-12 76.6 87 50.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.1e-12 76.6 87 50.6
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-12 75.9 93 49.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.9e-12 75.9 93 49.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.9e-12 75.9 89 51.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 2.5e-12 75.5 91 49.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.5e-12 75.5 103 47.6
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.5e-12 75.5 105 46.7
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 3.3e-12 75.1 87 50.6
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.3e-12 75.1 91 53.8
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.3e-12 74.7 87 50.6
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.3e-12 74.7 92 50.0
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.3e-12 74.7 86 52.3
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 5.7e-12 74.3 86 50.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.7e-12 74.3 101 48.5
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 5.7e-12 74.3 104 48.1
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 7.4e-12 73.9 86 48.8
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 7.4e-12 73.9 86 48.8
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 9.7e-12 73.6 120 43.3
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-11 73.2 83 51.8
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.6e-11 72.8 84 50.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.6e-11 72.8 77 54.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.2e-11 72.4 102 49.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.2e-11 72.4 95 50.5
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 4.8e-11 71.2 97 44.3
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 6.3e-11 70.9 101 45.5
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.2e-11 70.5 89 44.9
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.2e-11 70.5 93 49.5
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.1e-10 70.1 94 48.9
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-10 70.1 94 45.7
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.4e-10 69.7 92 45.7
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.4e-10 69.7 85 49.4
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.8e-10 69.3 92 46.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.4e-10 68.9 95 47.4
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.1e-10 68.6 85 52.9
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 3.1e-10 68.6 92 47.8
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 5.3e-10 67.8 86 45.3
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 6.9e-10 67.4 88 50.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 6.9e-10 67.4 90 50.0
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 9.0e-10 67.0 110 46.4
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-09 66.6 91 50.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-09 66.6 90 50.0
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-09 66.6 90 46.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-09 66.6 90 50.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-09 66.6 90 50.0
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.2e-09 66.6 96 51.0
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.2e-09 66.6 94 45.7
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-09 66.2 90 47.8
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.0e-09 65.9 91 49.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.0e-09 65.9 84 47.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.0e-09 65.9 90 46.7
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.6e-09 65.5 97 43.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.6e-09 65.5 76 50.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.5e-09 64.7 91 48.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.5e-09 64.7 84 48.8
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 5.9e-09 64.3 73 49.3
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 5.9e-09 64.3 85 47.1
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 5.9e-09 64.3 87 43.7
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.6e-09 63.9 113 42.5
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 7.6e-09 63.9 113 42.5
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.0e-08 63.5 85 47.1
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.0e-08 63.5 87 44.8
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.0e-08 63.5 92 45.7
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-08 63.5 94 45.7
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.0e-08 63.5 84 48.8
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.3e-08 63.2 94 45.7
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-08 62.4 83 45.8
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.2e-08 62.4 83 45.8
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.4e-07 59.7 84 46.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.9e-07 59.3 89 46.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.2e-07 58.5 109 39.4
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-06 56.6 83 42.2
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.1e-06 55.8 70 48.6
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 2.7e-06 55.5 74 43.2


User provided reference genes

Program Settings