Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.2e-202 709.5 348 100.0
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.6e-85 320.5 376 46.8
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 3.5e-80 302.8 369 46.6
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 6.6e-79 298.5 368 45.7
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.5e-78 297.4 381 46.7
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.6e-77 293.9 365 45.8
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.1e-76 289.7 383 43.6
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 5.2e-76 288.9 395 46.3
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.5e-75 287.3 366 45.6
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 8.4e-74 281.6 367 43.3
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.7e-72 276.6 363 45.7
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 3.5e-72 276.2 364 45.3
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 3.5e-72 276.2 360 42.5
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 7.8e-72 275.0 405 40.7
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.0e-71 274.6 365 42.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 3.0e-71 273.1 368 43.5
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 6.6e-71 271.9 364 42.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 3.3e-70 269.6 286 51.0
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 6.2e-69 265.4 419 38.2
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 8.1e-69 265.0 367 43.9
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.4e-68 264.2 363 42.4
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.4e-68 264.2 362 41.7
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 2.4e-68 263.5 439 37.6
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 4.0e-68 262.7 364 43.1
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 4.0e-68 262.7 364 43.1
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-67 261.2 363 42.1
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.6e-67 260.0 382 41.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.8e-67 258.8 358 41.1
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.8e-67 258.8 382 40.8
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.8e-66 256.1 364 42.6
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 8.4e-66 255.0 389 39.1
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 5.4e-65 252.3 356 42.4
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 7.1e-65 251.9 335 45.4
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 9.3e-65 251.5 346 43.9
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 9.3e-65 251.5 341 43.1
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 1.2e-64 251.1 361 41.6
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.6e-64 250.8 415 36.9
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 6.0e-64 248.8 372 40.1
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 7.9e-64 248.4 342 40.6
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.9e-63 246.1 365 41.4
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.1e-62 244.6 364 40.1
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.9e-62 243.8 378 38.9
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 5.6e-62 242.3 417 35.0
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 7.4e-62 241.9 339 42.2
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 9.6e-62 241.5 466 36.1
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.1e-61 240.4 340 41.5
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 3.6e-61 239.6 364 40.1
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 6.2e-61 238.8 379 39.1
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 6.2e-61 238.8 369 37.7
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.4e-60 236.9 358 40.5
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.4e-60 236.9 395 38.5
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.4e-60 236.9 364 41.2
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 9.0e-60 235.0 339 38.6
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-59 234.6 374 40.1
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.5e-59 234.2 342 40.4
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.0e-59 233.8 386 37.6
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 3.4e-59 233.0 442 36.0
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.4e-59 233.0 357 40.9
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.8e-59 232.3 343 40.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 7.6e-59 231.9 447 37.1
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-58 231.1 371 39.6
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.9e-58 229.9 365 40.0
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.8e-58 229.6 339 40.1
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.8e-58 229.6 192 53.6
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.9e-57 227.3 395 38.2
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.9e-57 227.3 172 58.1
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 2.4e-57 226.9 340 39.4
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 3.2e-57 226.5 296 43.2
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.2e-56 224.6 316 44.3
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.6e-56 224.2 341 41.3
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 5.1e-55 219.2 324 39.5
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 8.7e-55 218.4 219 48.4
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 7.4e-54 215.3 247 44.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 2.4e-52 210.3 371 37.2
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 4.0e-52 209.5 391 36.8
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 4.0e-52 209.5 400 34.5
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.3e-52 209.1 443 33.2
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 9.0e-52 208.4 299 38.1
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 9.0e-52 208.4 448 32.1
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.6e-51 206.8 172 52.9
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 3.8e-50 203.0 365 35.1
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.1e-49 201.4 212 43.4
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-49 199.5 373 33.2
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 4.2e-49 199.5 197 47.2
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 9.3e-49 198.4 357 34.5
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 1.2e-48 198.0 246 41.1
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.1e-48 197.2 336 36.6
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.3e-47 193.7 172 50.0
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.1e-46 191.4 255 41.2
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.9e-46 190.7 180 49.4
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.5e-46 190.3 360 34.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.5e-46 190.3 185 50.3
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 9.6e-46 188.3 373 31.6
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 6.3e-45 185.7 346 34.1
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 3.1e-44 183.3 212 42.5
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 9.0e-44 181.8 205 45.4
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 4.5e-43 179.5 138 58.7
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.9e-43 179.1 344 33.7
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 7.6e-43 178.7 347 34.3
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.3e-42 177.9 348 33.9
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.3e-42 177.9 172 45.9
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.7e-42 177.6 342 33.9
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.8e-42 176.4 348 31.6
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 5.5e-41 172.6 337 32.3
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 5.5e-41 172.6 295 36.9
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 9.3e-41 171.8 319 31.3
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 9.3e-41 171.8 345 33.9
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.2e-40 171.4 336 35.1
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.1e-40 170.6 337 32.3
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.3e-39 167.9 320 31.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 5.1e-39 166.0 346 33.2
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 6.7e-39 165.6 348 30.7
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 8.7e-39 165.2 130 60.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.9e-38 164.1 343 32.4
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 5.7e-38 162.5 172 45.3
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 9.7e-38 161.8 175 45.7
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 9.7e-38 161.8 175 45.7
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 2.8e-37 160.2 340 30.0
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 6.3e-37 159.1 179 43.0
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.3e-37 159.1 175 43.4
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 3.1e-36 156.8 174 43.1
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 3.1e-36 156.8 346 33.2
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.7e-34 151.0 319 31.3
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 3.8e-34 149.8 175 45.1
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 6.5e-34 149.1 322 32.0
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-33 148.3 320 31.9
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-33 148.3 320 31.9
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.9e-33 147.5 324 31.8
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 2.7e-32 143.7 321 31.5
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 4.6e-32 142.9 115 52.2
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 3.0e-31 140.2 175 42.3
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.9e-31 139.8 349 29.2
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.5e-30 137.9 272 34.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 2.0e-30 137.5 124 50.8
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.3e-30 136.7 96 59.4
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.7e-29 134.4 128 48.4
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 4.8e-29 132.9 300 29.7
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 4.8e-29 132.9 300 29.7
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 6.3e-29 132.5 300 30.0
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 3.1e-28 130.2 220 34.1
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.5e-27 127.9 273 33.7
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.5e-27 127.9 268 32.8
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 5.9e-27 125.9 157 38.9
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 5.9e-27 125.9 185 36.8
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 1.1e-25 121.7 129 44.2
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.4e-25 121.3 181 34.8
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.9e-25 120.9 194 33.5
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.2e-25 119.0 122 45.9
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 9.4e-25 118.6 288 28.8
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 9.1e-20 102.1 179 31.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 5.9e-19 99.4 297 28.3
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.9e-17 94.4 215 33.5
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 9.4e-17 92.0 175 31.4
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.2e-16 91.7 131 38.9
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 6.1e-16 89.4 133 36.1
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 6.7e-15 85.9 132 32.6
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-13 80.9 234 32.1
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.4e-12 78.2 206 34.5
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.4e-12 78.2 63 55.6
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 3.1e-12 77.0 263 24.3
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 3.1e-12 77.0 263 24.3
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 4.1e-12 76.6 248 33.1
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 2.7e-11 73.9 49 67.3
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.9e-10 70.5 45 62.2
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.2e-09 67.0 112 35.7
Sopen11g001510 Solanum pennellii HOM05D001580 ORTHO05D001517 4.0e-07 60.1 150 30.7
Solyc11g005525.1 Solanum lycopersicum HOM05D001580 ORTHO05D001517 4.4e-06 56.6 150 30.0
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 5.7e-06 56.2 56 51.8
SalBow5G5209 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.7e-06 56.2 31 71.0
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 9.8e-06 55.5 88 39.8
Pp3c20_13300 Physcomitrium patens HOM05D003141 ORTHO05D000421 9.8e-06 55.5 208 26.0


User provided reference genes

Program Settings