Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.4e-176 622.9 322 100.0
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 3.3e-101 372.5 245 75.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.3e-101 372.5 264 70.1
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.4e-101 372.1 264 70.1
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.1e-99 367.5 276 67.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 7.0e-99 364.8 263 68.8
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 9.1e-99 364.4 250 72.8
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 2.6e-98 362.8 244 73.0
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.6e-98 362.8 247 71.3
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 2.6e-98 362.8 284 65.8
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.5e-98 362.5 249 73.5
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.5e-98 362.1 247 71.3
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 5.9e-98 361.7 244 72.5
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 7.7e-98 361.3 262 70.2
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 7.7e-98 361.3 244 72.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.3e-97 360.5 265 68.7
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.7e-97 360.1 249 69.9
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.2e-97 359.8 251 69.3
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 2.2e-97 359.8 245 72.2
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 8.5e-97 357.8 258 70.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.1e-96 357.5 246 70.7
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.1e-96 357.5 282 66.3
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.2e-96 355.5 256 69.1
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.5e-96 355.1 288 66.0
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 5.5e-96 355.1 247 70.4
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.6e-95 353.6 258 69.8
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.1e-95 353.2 291 63.9
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.7e-95 352.1 264 67.4
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 4.7e-95 352.1 290 61.0
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 8.0e-95 351.3 250 70.0
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.0e-94 350.9 252 70.2
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.4e-94 350.5 258 69.0
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.8e-94 350.1 264 66.7
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.8e-94 350.1 260 66.2
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 2.3e-94 349.7 264 66.3
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 2.3e-94 349.7 255 67.8
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.0e-94 349.4 266 66.5
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 4.0e-94 349.0 226 74.8
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 4.0e-94 349.0 252 69.0
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 5.2e-94 348.6 258 68.6
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 6.7e-94 348.2 231 72.3
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.1e-93 347.4 227 74.4
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.5e-93 347.1 245 69.4
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 2.0e-93 346.7 247 68.4
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.6e-93 346.3 290 60.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 3.3e-93 345.9 268 66.0
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 4.4e-93 345.5 226 74.8
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 7.5e-93 344.7 251 68.9
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 7.5e-93 344.7 245 70.2
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 9.7e-93 344.4 250 69.2
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.3e-92 344.0 243 69.1
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.7e-92 343.6 245 70.2
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.7e-92 343.6 245 68.2
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 3.7e-92 342.4 245 69.4
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 3.7e-92 342.4 246 69.1
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 4.8e-92 342.0 226 73.5
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 8.2e-92 341.3 253 65.6
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.1e-91 340.9 250 66.8
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.1e-91 340.9 247 67.2
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.4e-91 340.5 224 75.0
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.4e-91 340.5 248 70.2
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 1.4e-91 340.5 246 68.7
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 3.1e-91 339.3 232 72.4
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.1e-91 339.3 225 74.7
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 4.1e-91 339.0 256 66.8
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 5.3e-91 338.6 245 69.4
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 5.3e-91 338.6 248 68.5
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 9.1e-91 337.8 244 68.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.2e-90 337.4 232 70.7
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.0e-90 336.7 245 68.2
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 4.5e-90 335.5 247 66.0
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 5.9e-90 335.1 225 74.2
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 5.9e-90 335.1 225 72.9
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.0e-89 334.3 247 65.6
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.0e-89 334.3 246 66.3
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.7e-89 333.6 225 73.8
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 3.8e-89 332.4 224 71.4
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 6.5e-89 331.6 225 71.6
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 8.5e-89 331.3 306 56.5
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 2.5e-88 329.7 261 65.1
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 3.2e-88 329.3 244 68.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 7.2e-88 328.2 242 67.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 9.4e-88 327.8 224 70.5
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.6e-87 327.0 253 65.2
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.0e-86 324.3 207 77.3
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 5.2e-86 322.0 232 67.2
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.5e-85 320.5 253 64.8
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 3.7e-84 315.8 253 59.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 5.4e-83 312.0 225 68.4
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 9.1e-83 311.2 220 70.5
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.0e-81 307.8 213 69.5
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.1e-80 304.3 246 63.4
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.9e-80 303.5 267 59.6
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.6e-79 299.3 228 64.9
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 4.7e-79 298.9 240 65.8
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 4.7e-79 298.9 204 73.0
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 8.0e-79 298.1 230 65.7
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 8.0e-79 298.1 265 56.6
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 3.4e-77 292.7 212 68.4
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 4.4e-77 292.4 264 56.8
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.4e-75 287.3 230 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 3.1e-75 286.2 289 52.2
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 8.6e-73 278.1 250 58.4
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 3.0e-70 269.6 289 51.6
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.6e-69 266.5 206 66.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 6.6e-65 251.9 189 66.7
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 2.0e-61 240.4 266 50.0
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 5.4e-59 232.3 140 77.9
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.6e-47 194.1 149 65.1
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.2e-45 188.0 213 47.4
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 7.6e-45 185.3 223 45.3
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 6.2e-39 165.6 214 43.0
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 9.6e-32 141.7 88 76.1
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 9.0e-30 135.2 153 47.7
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 4.6e-26 122.9 137 49.6
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 3.2e-19 100.1 82 58.5
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 5.5e-19 99.4 66 71.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.6e-18 97.8 55 83.6
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 2.7e-18 97.1 68 63.2
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.5e-16 90.5 61 70.5
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 1.6e-15 87.8 89 53.9
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.6e-15 87.8 168 34.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.4e-14 84.7 63 60.3
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 4.5e-13 79.7 63 61.9
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 2.2e-12 77.4 50 76.0
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 6.5e-12 75.9 51 70.6
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.1e-11 75.1 103 41.7
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 5.5e-11 72.8 170 32.4
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.2e-10 71.6 49 69.4
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 4.6e-10 69.7 69 53.6
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.0e-09 68.6 53 62.3
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 4.3e-08 63.2 43 65.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 5.7e-08 62.8 82 43.9


User provided reference genes

Program Settings