Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.8e-155 552.7 318 100.0
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.3e-94 350.5 293 72.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 2.8e-92 342.8 294 72.8
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 3.7e-92 342.4 293 75.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.4e-91 340.5 304 73.0
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.8e-91 340.1 318 67.9
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.6e-90 336.3 295 71.5
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.4e-88 330.5 295 72.9
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 7.9e-87 324.7 304 62.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 5.1e-86 322.0 290 68.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.1e-85 320.9 290 68.6
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.5e-85 319.7 298 66.1
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.6e-85 317.8 295 64.7
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.8e-84 316.2 305 63.3
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 6.2e-84 315.1 285 66.7
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.4e-83 313.9 309 68.3
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.4e-83 313.2 290 66.9
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.1e-83 312.8 303 64.7
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-82 310.8 302 62.3
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 2.0e-82 310.1 283 72.4
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.3e-81 307.4 279 69.9
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.8e-81 305.8 283 62.2
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 6.5e-81 305.1 324 60.2
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 8.4e-81 304.7 314 62.7
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.9e-80 303.5 294 66.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.5e-80 303.1 299 64.2
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.5e-80 302.0 292 65.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 7.1e-80 301.6 291 70.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 9.3e-80 301.2 293 63.5
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 9.3e-80 301.2 293 63.5
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.6e-79 300.4 302 65.9
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.7e-79 299.7 293 65.9
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.0e-78 297.7 293 64.8
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.3e-78 296.6 308 65.6
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.3e-78 296.6 296 62.2
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.9e-78 295.8 302 61.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 6.7e-78 295.0 301 61.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 8.7e-78 294.7 288 58.7
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-77 294.3 327 62.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.5e-77 293.9 309 62.1
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.9e-77 293.5 289 65.7
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.3e-77 292.7 293 58.0
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.3e-77 292.7 312 60.3
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.7e-77 292.0 312 62.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.8e-76 289.7 296 66.9
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.8e-76 289.7 296 67.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.8e-76 289.7 293 65.9
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.7e-76 289.3 309 62.5
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 3.7e-76 289.3 299 58.9
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.1e-75 287.7 271 60.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.1e-75 287.7 289 68.2
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 3.1e-75 286.2 285 61.8
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.1e-75 285.8 300 65.7
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 6.9e-75 285.0 297 64.3
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.2e-74 284.3 295 65.1
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.0e-74 283.5 291 59.8
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 2.0e-74 283.5 316 60.4
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.4e-74 282.7 293 61.1
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.7e-74 281.6 301 61.1
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.7e-73 280.4 295 63.4
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 8.5e-73 278.1 317 57.7
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 8.5e-73 278.1 316 52.5
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 8.5e-73 278.1 316 52.5
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.4e-72 277.3 304 65.1
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.9e-72 276.9 286 64.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 4.2e-72 275.8 303 61.7
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 4.2e-72 275.8 282 64.5
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 5.5e-72 275.4 318 57.5
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.5e-72 275.4 298 62.4
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 9.4e-72 274.6 294 62.9
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.1e-71 273.5 304 61.2
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.7e-71 273.1 289 62.6
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.6e-71 272.3 295 62.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 4.6e-71 272.3 287 62.4
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 4.6e-71 272.3 291 64.9
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.6e-71 272.3 290 64.5
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.8e-70 270.4 285 59.6
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.8e-70 270.4 345 57.1
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.8e-70 270.4 289 59.9
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.7e-70 268.5 271 64.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 3.3e-69 266.2 286 61.9
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 9.7e-69 264.6 334 56.6
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.3e-68 264.2 313 61.7
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.3e-68 264.2 293 61.8
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 2.8e-68 263.1 311 61.1
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 3.7e-68 262.7 311 61.1
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 4.8e-68 262.3 302 62.3
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 6.3e-68 261.9 296 62.2
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 8.2e-68 261.5 305 60.0
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.4e-67 260.8 305 58.4
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 2.4e-67 260.0 287 63.4
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.1e-67 259.2 294 57.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.5e-66 257.3 309 56.6
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.0e-66 256.9 323 60.7
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 3.4e-66 256.1 264 63.3
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 3.4e-66 256.1 286 60.8
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.5e-66 255.8 301 57.5
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 7.7e-66 255.0 303 58.7
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.3e-65 254.2 274 63.1
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 5.0e-65 252.3 305 63.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.4e-64 250.8 398 47.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.9e-64 250.4 299 62.5
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 9.4e-64 248.1 302 59.3
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 9.4e-64 248.1 283 61.8
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.2e-63 247.7 314 54.8
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.6e-63 247.3 283 61.1
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.1e-63 246.9 293 60.4
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.6e-63 246.1 306 60.1
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 4.7e-63 245.7 308 60.7
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.4e-62 244.2 286 60.8
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-62 244.2 283 58.3
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.3e-62 243.4 290 54.8
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.5e-61 240.7 299 60.9
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.5e-61 240.7 211 70.6
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.6e-61 240.0 280 61.1
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.6e-61 240.0 280 61.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 7.4e-61 238.4 305 59.7
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.8e-60 236.5 279 58.8
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 4.8e-60 235.7 331 51.1
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 3.5e-58 229.6 290 57.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 5.9e-58 228.8 288 58.0
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.8e-57 226.1 289 54.3
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 8.5e-57 224.9 304 59.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.9e-56 223.8 287 54.7
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.2e-56 223.0 294 53.1
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 9.4e-56 221.5 315 55.6
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.6e-55 220.7 290 55.2
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.7e-55 219.2 292 57.9
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.0e-54 218.0 320 50.6
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.0e-54 218.0 367 48.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.4e-54 217.6 288 52.1
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.3e-54 216.9 304 52.6
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 8.8e-54 214.9 338 51.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.0e-53 213.8 270 58.5
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 4.4e-53 212.6 305 59.3
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.5e-50 202.6 286 52.8
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 7.7e-50 201.8 294 47.6
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.0e-49 201.4 204 72.1
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 3.2e-48 196.4 296 51.0
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.0e-45 187.2 313 45.4
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.6e-45 186.8 202 58.9
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.5e-45 185.3 212 62.7
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.7e-45 184.9 313 42.8
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.2e-44 183.7 204 57.8
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.8e-43 180.6 202 62.4
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 3.1e-43 179.9 290 50.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 9.1e-43 178.3 232 64.7
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.5e-41 171.8 292 48.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 2.1e-39 167.2 202 57.9
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.4e-37 159.5 140 60.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.3e-36 157.9 236 56.4
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.9e-33 146.7 99 73.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.9e-32 144.1 299 45.5
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 3.3e-32 143.3 165 64.2
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.6e-31 139.8 315 46.3
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 3.4e-29 133.3 302 46.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 7.8e-26 122.1 327 40.4
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.3e-25 121.3 340 40.3
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.0e-25 119.4 218 48.6
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.9e-24 117.5 100 57.0
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 7.3e-24 115.5 201 57.7
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 8.0e-23 112.1 86 69.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.0e-22 111.7 75 72.0
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.3e-22 110.5 88 64.8
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.5e-21 107.8 80 70.0
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.0e-21 107.5 108 57.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.6e-21 107.1 146 43.8
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 4.4e-21 106.3 79 65.8
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.5e-21 105.5 114 57.0
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 2.2e-20 104.0 78 69.2
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.0e-17 93.6 60 73.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.9e-17 93.2 62 71.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.3e-16 90.1 109 47.7
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.1e-15 87.4 62 62.9
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 4.7e-15 86.3 300 43.0
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.3e-12 75.5 45 82.2
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.2e-11 72.0 113 46.9
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.2e-11 72.0 100 50.0
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.7e-09 67.8 86 47.7
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 5.6e-08 62.8 78 51.3
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 2.8e-07 60.5 258 41.9
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 6.2e-07 59.3 46 69.6
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 1.4e-06 58.2 106 58.5
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.3e-06 57.4 100 47.0
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 2.3e-06 57.4 78 47.4


User provided reference genes

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