Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 0.0e+00 1233.8 627 100.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.0e-287 993.0 617 82.5
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.3e-282 976.1 618 80.6
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.0e-276 954.5 617 79.6
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 4.0e-276 954.5 689 72.9
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.7e-274 949.1 603 79.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.1e-273 946.4 619 78.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.1e-273 946.4 637 77.6
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 5.4e-273 944.1 604 80.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 7.8e-272 940.3 619 77.9
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 5.6e-270 934.1 604 79.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.2e-269 932.9 621 76.8
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.1e-269 932.2 602 79.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.8e-269 931.8 619 77.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 4.0e-268 927.9 619 77.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.5e-267 926.0 591 80.0
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.7e-266 922.5 590 79.3
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.7e-266 922.5 627 76.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.4e-265 918.7 621 76.5
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 4.2e-265 917.9 592 79.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.6e-264 914.4 632 76.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 7.8e-264 913.7 612 77.0
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.3e-263 912.9 601 77.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.3e-263 912.9 621 76.2
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.3e-263 912.1 618 75.6
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.3e-263 912.1 612 77.1
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.1e-262 909.8 634 76.7
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.3e-262 907.9 627 75.8
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 4.3e-262 907.9 619 75.6
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 9.6e-262 906.7 592 78.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.1e-261 905.6 619 75.6
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.8e-261 905.2 591 78.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.8e-261 905.2 621 75.8
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.6e-261 904.8 621 75.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.7e-261 904.4 627 74.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.1e-260 903.3 629 74.6
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.1e-260 903.3 619 74.6
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.1e-260 903.3 603 76.9
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.4e-260 902.1 594 77.9
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.1e-260 901.7 601 76.2
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.1e-260 901.7 604 77.8
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.1e-260 901.7 627 74.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.0e-260 901.4 619 75.3
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 6.9e-260 900.6 600 76.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.2e-259 899.8 621 75.5
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 3.4e-259 898.3 621 75.0
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.4e-259 897.9 620 75.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 4.4e-259 897.9 627 74.2
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.8e-258 894.8 590 76.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 4.9e-258 894.4 595 77.5
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 8.4e-258 893.6 596 76.7
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.2e-256 889.8 619 74.8
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.1e-256 889.0 612 75.3
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.1e-256 889.0 596 76.5
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.5e-256 888.3 619 74.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.9e-255 884.8 596 76.2
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.6e-255 884.0 642 73.1
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.1e-254 883.2 618 74.8
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.5e-254 882.9 607 75.5
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.5e-254 882.1 603 76.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 9.6e-254 880.2 611 74.3
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.6e-253 879.4 601 75.4
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.1e-253 879.0 630 74.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.8e-253 878.6 627 74.3
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 8.1e-253 877.1 620 73.1
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.0e-252 874.8 601 76.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.3e-252 874.4 594 75.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.5e-251 872.8 627 73.5
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.0e-251 872.5 587 76.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-251 872.5 577 77.6
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.6e-251 872.1 598 75.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.3e-250 869.8 603 75.0
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.7e-250 869.4 598 75.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-250 869.4 575 78.3
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 8.4e-250 867.1 578 77.9
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.4e-249 866.3 597 75.0
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 7.9e-248 860.5 626 73.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.3e-247 859.8 626 73.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.0e-247 858.6 607 72.8
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 3.7e-245 851.7 517 83.0
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.0e-242 843.6 580 74.0
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.9e-242 842.0 607 72.3
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.5e-241 839.0 602 71.6
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.5e-240 835.1 603 71.8
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.3e-239 833.2 573 74.3
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.7e-239 830.9 633 69.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 3.3e-238 828.6 600 71.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.4e-238 827.4 601 72.0
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 7.4e-238 827.4 627 69.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.1e-237 825.9 573 74.0
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.4e-236 823.2 587 72.9
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.0e-236 821.6 556 76.8
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 6.9e-236 820.8 530 78.1
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.0e-235 819.3 574 73.7
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 5.8e-235 817.8 596 70.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.0e-234 817.0 622 69.9
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-234 816.6 574 74.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.5e-233 812.4 601 70.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 5.5e-233 811.2 601 69.7
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-232 809.7 601 69.6
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 6.1e-232 807.7 577 73.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.1e-232 807.7 609 69.5
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.5e-230 803.1 572 72.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-230 802.7 601 69.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.9e-230 802.7 601 69.6
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.7e-229 798.5 576 71.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.8e-229 798.1 608 68.8
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.1e-228 797.0 598 69.7
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-228 796.2 598 69.6
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.6e-227 792.3 577 71.4
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.5e-227 791.6 606 69.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.0e-226 790.4 568 71.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-226 789.6 624 67.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.8e-226 788.5 602 69.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.3e-223 779.2 623 67.9
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 7.4e-222 774.2 545 72.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 7.4e-222 774.2 545 72.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 7.7e-219 764.2 581 71.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.7e-218 763.1 593 70.0
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.7e-215 751.1 573 69.1
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.3e-214 748.8 630 63.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.8e-212 743.0 513 75.2
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.7e-211 737.6 517 70.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-210 737.3 526 71.1
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.9e-210 735.7 591 65.5
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.2e-208 730.3 549 67.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.6e-208 729.9 624 60.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.6e-208 728.8 577 66.6
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.3e-207 726.1 518 72.6
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.6e-206 722.6 600 66.5
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.2e-205 717.6 624 62.5
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 7.0e-204 714.5 623 62.8
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.2e-200 703.7 418 84.0
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 5.7e-198 694.9 412 84.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.2e-194 682.9 569 64.5
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.9e-194 682.6 410 83.9
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.2e-193 677.9 405 83.2
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-192 676.8 533 66.6
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-192 676.0 533 66.6
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.5e-190 667.9 526 66.2
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.0e-187 659.8 495 68.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.0e-186 655.2 526 65.2
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.0e-183 645.6 512 66.4
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.7e-181 640.2 500 65.6
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.3e-173 614.0 477 70.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 6.6e-170 601.7 579 54.7
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.4e-158 562.4 476 60.9
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 7.3e-153 545.0 524 58.2
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.2e-152 542.0 378 72.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.5e-139 499.6 339 75.2
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.0e-134 483.8 339 72.9
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-132 477.2 456 57.7
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.1e-107 394.0 310 66.5
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.4e-73 280.0 157 87.9
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 2.7e-62 244.2 145 85.5
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.3e-45 188.7 193 53.4
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.9e-44 184.9 193 51.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 2.8e-43 181.0 159 57.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.8e-42 178.3 159 57.2
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.0e-37 162.5 123 66.7
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.8e-35 154.5 98 78.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.5e-25 122.1 95 63.2
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.9e-25 119.4 307 30.9
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-23 115.2 311 29.9
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.4e-23 113.6 91 62.6
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.9e-20 105.1 115 51.3
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.4e-18 99.0 127 43.3
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.3e-18 97.1 60 80.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-16 91.3 190 31.6
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-15 89.4 227 32.6
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.9e-15 88.6 86 54.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.2e-14 85.9 91 57.1
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 3.0e-13 81.3 70 70.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-09 68.2 74 55.4
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.1e-06 58.5 56 46.4
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.6e-06 57.4 80 47.5


User provided reference genes

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