Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0002450 Simmondsia chinensis HOM05D007553 ORTHO05D009123 3.9e-45 184.5 98 100.0
Sc13g0008070 Simmondsia chinensis HOM05D007553 ORTHO05D009123 2.2e-24 115.5 95 72.6
A07p24890 Brassica napus HOM05D007553 ORTHO05D009123 3.8e-16 88.2 92 55.4
Manes.01G009500 Manihot esculenta HOM05D007553 ORTHO05D009123 5.0e-16 87.8 66 69.7
AT3G59900 Arabidopsis thaliana HOM05D007553 ORTHO05D009123 1.9e-15 85.9 79 60.8
THA.LOC104804341 Tarenaya hassleriana HOM05D007553 ORTHO05D009123 4.2e-15 84.7 86 55.8
AL5G42060 Arabidopsis lyrata HOM05D007553 ORTHO05D009123 5.5e-15 84.3 96 54.2
C06p26460 Brassica napus HOM05D007553 ORTHO05D009123 5.5e-15 84.3 92 54.3
THA.LOC104802351 Tarenaya hassleriana HOM05D007553 ORTHO05D009123 7.2e-15 84.0 86 54.7
BcaC07g40396 Brassica carinata HOM05D007553 ORTHO05D009123 1.6e-14 82.8 94 52.1
CARHR170230 Cardamine hirsuta HOM05D007553 ORTHO05D009123 1.6e-14 82.8 95 53.7
Migut.N03014 Erythranthe guttata HOM05D007553 ORTHO05D009123 2.1e-14 82.4 87 59.8
AUR62002498 Chenopodium quinoa HOM05D007553 ORTHO05D009123 8.0e-14 80.5 88 55.7
PGR042G0659 Punica granatum HOM05D007553 ORTHO05D009123 1.8e-13 79.3 81 58.0
BcaC07g40546 Brassica carinata HOM05D007553 ORTHO05D009123 2.3e-13 79.0 69 63.8
BolC8t51089H Brassica oleracea HOM05D007553 ORTHO05D009123 2.3e-13 79.0 69 63.8
BraA03t11673Z Brassica rapa HOM05D007553 ORTHO05D009123 5.2e-13 77.8 77 54.5
BcaC01g05187 Brassica carinata HOM05D007553 ORTHO05D009123 1.2e-12 76.6 78 53.8
A03p24670 Brassica napus HOM05D007553 ORTHO05D009123 1.2e-12 76.6 78 53.8
A09p52250 Brassica napus HOM05D007553 ORTHO05D009123 1.5e-12 76.3 83 56.6
C03p29410 Brassica napus HOM05D007553 ORTHO05D009123 1.5e-12 76.3 97 46.4
BolC3t15289H Brassica oleracea HOM05D007553 ORTHO05D009123 1.5e-12 76.3 97 46.4
BraA09t40654Z Brassica rapa HOM05D007553 ORTHO05D009123 1.5e-12 76.3 83 56.6
BcaC08g45014 Brassica carinata HOM05D007553 ORTHO05D009123 3.4e-12 75.1 92 48.9
BolC6t37809H Brassica oleracea HOM05D007553 ORTHO05D009123 3.4e-12 75.1 92 48.9
QL10p064915 Quercus lobata HOM05D007553 ORTHO05D009123 3.4e-12 75.1 65 61.5
A05p04200 Brassica napus HOM05D007553 ORTHO05D009123 7.5e-12 73.9 101 44.6
BraA05t19405Z Brassica rapa HOM05D007553 ORTHO05D009123 7.5e-12 73.9 101 44.6
BraA07t30131Z Brassica rapa HOM05D007553 ORTHO05D009123 7.5e-12 73.9 92 50.0
BcaC02g12342 Brassica carinata HOM05D007553 ORTHO05D009123 1.3e-11 73.2 101 44.6
C04p04960 Brassica napus HOM05D007553 ORTHO05D009123 1.3e-11 73.2 101 44.6
BolC4t22127H Brassica oleracea HOM05D007553 ORTHO05D009123 1.3e-11 73.2 101 44.6
Thhalv10001780m.g Eutrema salsugineum HOM05D007553 ORTHO05D009123 1.3e-11 73.2 100 45.0
TWI15G0237 Tripterygium wilfordii HOM05D007553 ORTHO05D009123 1.3e-11 73.2 83 53.0
Ah.07g203320 Amaranthus hybridus HOM05D007553 ORTHO05D009123 1.7e-11 72.8 94 51.1
CARHR139250 Cardamine hirsuta HOM05D007553 ORTHO05D009123 1.7e-11 72.8 87 48.3
Cpa.g.sc9.240 Carica papaya HOM05D007553 ORTHO05D009123 1.7e-11 72.8 81 54.3
Sp4g26160 Schrenkiella parvula HOM05D007553 ORTHO05D009123 1.7e-11 72.8 86 50.0
AL4G42960 Arabidopsis lyrata HOM05D007553 ORTHO05D009123 8.3e-11 70.5 73 52.1
AT2G44080 Arabidopsis thaliana HOM05D007553 ORTHO05D009123 8.3e-11 70.5 73 52.1
BcaB02g07440 Brassica carinata HOM05D007553 ORTHO05D009123 8.3e-11 70.5 86 51.2
EL10Ac3g06183 Beta vulgaris HOM05D007553 ORTHO05D009123 1.1e-10 70.1 90 48.9
TAR365G1148 Trochodendron aralioides HOM05D007553 ORTHO05D009123 1.4e-10 69.7 90 47.8
BcaB01g03340 Brassica carinata HOM05D007553 ORTHO05D009123 2.4e-10 68.9 59 59.3
BcaB01g03341 Brassica carinata HOM05D007553 ORTHO05D009123 2.4e-10 68.9 59 59.3
MSTRG.24545 Avicennia marina HOM05D007553 ORTHO05D009123 4.1e-10 68.2 89 50.6
SHI01179 Sapria himalayana HOM05D007553 ORTHO05D009123 9.1e-10 67.0 92 47.8
Ciclev10022861m.g Citrus clementina HOM05D007553 ORTHO05D009123 2.0e-09 65.9 92 46.7
Zm00001eb112430 Zea mays HOM05D007553 ORTHO05D009123 2.0e-09 65.9 66 54.5
BcaB02g08922 Brassica carinata HOM05D007553 ORTHO05D009123 3.5e-09 65.1 105 42.9
Nn1g09400 Nelumbo nucifera HOM05D007553 ORTHO05D009123 1.0e-08 63.5 86 47.7
ECA248G0707 Erigeron canadensis HOM05D007553 ORTHO05D009123 1.3e-08 63.2 59 57.6
Atru.chr3.1958 Acer truncatum HOM05D007553 ORTHO05D009123 5.0e-08 61.2 81 50.6
Carub.0005s2664 Capsella rubella HOM05D007553 ORTHO05D009123 1.5e-07 59.7 79 48.1
MD02G1000700 Malus domestica HOM05D007553 ORTHO05D009123 1.5e-07 59.7 66 54.5
Zm00001eb145310 Zea mays HOM05D038911 ORTHO05D009123 3.2e-07 58.5 73 49.3
Carub.0004s2663 Capsella rubella HOM05D007553 ORTHO05D009123 1.2e-06 56.6 84 44.0
Thecc.05G000600 Theobroma cacao HOM05D007553 ORTHO05D009123 1.2e-06 56.6 92 44.6
Glyma.13G195500 Glycine max HOM05D009082 ORTHO05D011191 2.7e-06 55.5 52 53.8
Nn7g37423 Nelumbo nucifera HOM05D007553 ORTHO05D009123 3.6e-06 55.1 84 41.7
Thhalv10006308m.g Eutrema salsugineum HOM05D007553 ORTHO05D009123 8.0e-06 53.9 55 54.5


User provided reference genes

Program Settings