Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 6.4e-79 297.4 150 100.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.9e-59 232.6 149 75.2
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.8e-57 226.1 147 74.8
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.4e-57 225.7 150 72.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 74.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.2e-57 224.6 147 74.1
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 72.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.2e-56 223.4 147 74.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 74.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 72.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 72.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 72.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 5.8e-56 221.1 147 71.4
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 5.8e-56 221.1 147 71.4
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 5.8e-56 221.1 147 71.4
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.3e-55 219.9 147 73.5
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.7e-55 219.5 147 72.8
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 69.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 70.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.8e-55 218.4 147 71.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 68.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 68.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.4e-55 217.2 147 71.4
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 149 70.5
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.1e-54 216.9 147 70.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 68.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 70.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 67.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 70.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 68.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 68.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 70.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 69.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 70.1
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 67.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 69.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 67.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 66.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 70.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 3.5e-53 211.8 143 69.9
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.0e-53 211.1 147 66.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.3e-52 209.9 147 69.4
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.3e-52 209.9 148 69.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-52 209.5 157 65.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.7e-52 209.5 147 69.4
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.7e-52 209.5 147 68.7
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 66.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 68.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 68.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 68.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 66.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 66.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 66.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 69.4
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.0e-52 208.8 146 69.2
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 66.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 68.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 5.1e-52 208.0 147 68.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.1e-52 208.0 147 67.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 66.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 147 67.3
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.1e-51 206.8 160 63.1
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 68.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 66.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 66.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 64.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 66.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.5e-51 205.7 149 63.8
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.3e-51 205.3 148 68.9
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 9.6e-51 203.8 144 67.4
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 9.6e-51 203.8 147 66.0
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-50 203.0 161 62.7
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 64.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.7e-50 201.4 150 66.0
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 66.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 64.0
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.4e-49 199.9 147 63.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.4e-49 199.1 148 64.9
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.1e-49 198.7 147 63.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.2e-48 196.8 159 61.0
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.5e-48 196.4 149 63.8
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.0e-48 196.1 146 63.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.6e-48 195.7 135 71.9
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.4e-48 195.3 150 62.7
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 3.4e-48 195.3 147 63.9
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 5.8e-48 194.5 161 59.6
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 7.6e-48 194.1 222 49.5
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.3e-47 193.4 146 63.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.2e-47 192.6 150 62.0
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.8e-47 191.8 167 58.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 4.9e-47 191.4 181 55.2
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 60.7
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.1e-46 190.3 152 62.5
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 62.4
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 66.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 4.2e-46 188.3 147 60.5
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 5.4e-46 188.0 149 60.4
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 7.1e-46 187.6 147 62.6
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.2e-45 186.8 149 60.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.2e-45 186.8 139 61.9
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 60.4
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 61.1
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 61.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 3.5e-45 185.3 147 59.2
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 6.0e-45 184.5 147 59.9
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 7.8e-45 184.1 149 59.1
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.0e-44 183.7 147 59.2
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.3e-44 183.3 149 59.1
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.0e-44 182.2 149 60.4
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.0e-44 182.2 139 62.6
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 5.1e-44 181.4 140 60.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.1e-44 181.4 144 59.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 8.7e-44 180.6 149 59.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-43 180.3 144 59.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-43 180.3 149 58.4
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-43 179.9 193 51.8
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.9e-43 179.5 144 56.9
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.9e-43 179.5 140 60.7
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.9e-43 179.5 140 60.7
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.9e-43 179.5 140 60.7
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.3e-43 178.7 150 58.0
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.3e-43 178.7 150 58.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.3e-43 178.3 140 60.0
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.6e-43 177.9 140 60.0
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 9.6e-43 177.2 147 55.8
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.1e-42 176.0 144 56.2
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.6e-42 175.3 150 55.3
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.6e-42 175.3 150 55.3
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-41 172.2 143 55.9
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-41 172.2 143 55.9
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 3.1e-41 172.2 143 55.9
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-40 169.9 144 54.9
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 55.9
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.3e-39 166.8 141 56.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 7.1e-38 161.0 151 57.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.1e-38 161.0 143 55.2
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 4.3e-35 151.8 140 55.0
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 5.6e-35 151.4 149 51.7
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 6.2e-34 147.9 108 63.9
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-33 146.4 105 64.8
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-33 146.4 105 64.8
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-32 142.5 149 51.0
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-31 139.4 104 61.5
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.4e-31 137.9 130 53.8
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.7e-29 132.5 105 60.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 6.0e-29 131.3 89 68.5
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 7.9e-29 131.0 128 52.3
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 7.9e-29 131.0 128 52.3
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.3e-28 129.4 89 69.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.9e-28 128.6 145 45.5
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.3e-27 125.6 89 65.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 4.8e-26 121.7 97 56.7
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.0e-25 118.6 144 42.4
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 2.6e-24 115.9 105 52.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.1e-22 110.5 84 56.0
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 5.5e-22 108.2 149 42.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.0e-20 104.0 78 60.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.8e-20 103.2 139 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 2.3e-20 102.8 138 36.2
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.9e-20 102.1 88 51.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.1e-20 101.7 103 46.6
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.1e-17 92.0 136 32.4
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.2e-16 90.5 144 37.5
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.7e-15 86.7 101 47.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.1e-14 84.0 147 30.6
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 7.2e-14 81.3 72 55.6
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.6e-13 80.1 52 71.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.7e-13 79.3 106 32.1
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-11 72.8 39 76.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 4.3e-11 72.0 84 41.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.4e-09 67.0 132 27.3
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.8e-09 66.6 79 46.8
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.8e-09 66.6 46 63.0
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 3.1e-09 65.9 129 27.1
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.3e-07 60.5 134 26.1
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.2e-06 55.8 82 39.0


User provided reference genes

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