Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.3e-238 829.3 426 100.0
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 2.9e-169 599.0 434 74.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 9.3e-168 594.0 436 73.9
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.2e-167 593.6 435 73.1
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 7.9e-167 590.9 432 72.7
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.0e-166 589.0 433 73.4
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.3e-165 585.5 437 72.3
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 4.1e-163 578.6 418 74.4
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 7.6e-162 574.3 420 72.1
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 1.3e-161 573.5 440 70.9
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.2e-161 572.8 473 66.6
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 5.0e-161 571.6 425 72.5
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.4e-160 570.1 436 70.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.9e-160 569.7 403 74.2
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 9.4e-160 567.4 446 69.7
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.1e-159 566.2 427 71.9
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.4e-158 563.5 443 69.5
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 3.0e-158 562.4 428 70.1
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.1e-157 560.5 422 71.3
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.5e-157 560.1 431 70.1
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.9e-157 559.7 444 70.3
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.9e-157 559.7 444 70.3
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.9e-157 559.7 405 73.8
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.3e-157 558.9 446 69.1
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 3.3e-157 558.9 416 73.3
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 4.3e-157 558.5 436 70.0
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 7.4e-157 557.8 440 69.5
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 9.7e-157 557.4 435 70.3
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.7e-156 556.6 433 70.0
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.7e-156 556.6 424 70.5
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 2.2e-156 556.2 429 70.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.8e-156 555.8 443 67.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.8e-156 555.1 429 71.6
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.8e-156 555.1 429 71.6
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 6.3e-156 554.7 436 70.2
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 6.3e-156 554.7 436 70.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 6.3e-156 554.7 431 68.9
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.4e-155 553.5 438 69.6
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.8e-155 553.1 401 72.6
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 5.3e-155 551.6 436 69.5
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 5.3e-155 551.6 440 68.2
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-154 550.4 424 71.0
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.2e-154 550.4 424 69.8
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 5.9e-154 548.1 429 69.5
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 7.7e-154 547.7 443 67.9
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.9e-153 545.8 426 70.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 2.9e-153 545.8 430 69.5
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 5.0e-153 545.0 440 67.0
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 6.5e-153 544.7 428 69.6
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 8.5e-153 544.3 437 67.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 8.5e-153 544.3 427 69.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.1e-152 543.9 428 68.0
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.4e-152 543.5 428 68.7
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.2e-152 542.3 420 68.6
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 4.2e-152 542.0 443 68.6
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.5e-152 541.6 413 69.7
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 7.2e-152 541.2 408 71.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 7.2e-152 541.2 437 68.6
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.2e-151 540.4 432 68.5
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.6e-151 540.0 434 68.9
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 2.1e-151 539.7 498 62.2
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.1e-151 539.7 435 69.0
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.0e-150 537.3 410 72.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.0e-150 537.3 420 68.8
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 8.8e-150 534.3 425 68.7
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.8e-150 534.3 405 69.9
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.5e-149 533.5 399 71.2
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.3e-149 532.3 405 69.9
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.3e-149 532.3 405 69.9
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 3.3e-149 532.3 445 66.3
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 4.4e-149 531.9 415 67.5
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 3.4e-146 522.3 406 70.2
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 5.9e-146 521.5 455 64.6
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 7.7e-146 521.2 396 69.9
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 7.7e-146 521.2 399 68.9
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.3e-145 520.4 401 67.6
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.8e-145 518.8 452 64.8
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 8.5e-145 517.7 428 66.4
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 5.5e-144 515.0 434 66.8
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 4.7e-143 511.9 422 65.4
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 4.7e-143 511.9 422 65.4
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 4.7e-143 511.9 422 66.6
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 8.8e-142 507.7 422 65.4
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.5e-141 506.9 422 65.2
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.0e-141 506.5 415 66.3
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 5.7e-141 505.0 422 64.9
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 5.7e-141 505.0 422 64.5
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 5.7e-141 505.0 435 65.3
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 9.7e-141 504.2 396 68.4
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.8e-140 502.7 433 66.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 3.7e-140 502.3 440 63.9
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 6.3e-140 501.5 557 54.8
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-138 497.3 444 62.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 4.5e-138 495.4 398 65.6
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-137 494.2 392 67.1
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 1.1e-136 490.7 398 67.1
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.2e-136 488.0 410 65.9
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 9.1e-131 471.1 372 70.2
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 2.2e-129 466.5 434 60.8
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 6.5e-129 464.9 499 53.3
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.0e-126 456.1 406 62.1
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.5e-125 453.8 394 60.2
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.0e-125 453.4 357 68.1
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 7.5e-125 451.4 394 60.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 3.7e-124 449.1 421 60.3
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.8e-123 446.8 428 59.3
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.4e-123 446.4 428 59.8
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.2e-122 444.1 445 57.3
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-122 443.7 393 60.6
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.6e-119 433.7 269 84.4
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.0e-119 431.4 429 59.7
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 2.2e-116 423.3 445 55.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 6.3e-116 421.8 398 59.8
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.1e-115 421.0 382 64.4
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 1.8e-115 420.2 377 61.0
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.3e-113 413.3 413 56.7
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.6e-113 411.8 406 56.7
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.6e-113 411.8 411 57.7
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-111 407.5 369 59.6
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 2.6e-109 399.8 354 61.3
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.5e-104 381.3 363 58.4
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.8e-103 379.8 363 57.6
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.8e-103 379.8 384 58.3
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 6.4e-100 368.6 363 58.7
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 9.5e-96 354.8 358 57.5
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 7.5e-93 345.1 603 40.6
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-89 334.0 402 50.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 4.7e-87 325.9 331 56.2
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 3.4e-85 319.7 296 61.5
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.7e-84 317.4 334 57.2
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 6.0e-82 308.9 320 54.7
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.9e-81 306.2 408 46.6
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.3e-73 280.4 303 55.4
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 3.3e-72 276.6 261 58.2
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.9e-67 260.8 289 51.2
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 2.1e-66 257.3 303 49.8
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 1.9e-59 234.2 121 95.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 9.6e-56 221.9 272 51.1
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 3.7e-55 219.9 253 54.5
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.2e-45 188.3 361 34.1
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 4.5e-45 186.4 191 55.0
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.1e-43 181.8 129 75.2
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 3.2e-43 180.3 103 84.5
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 3.1e-38 163.7 146 64.4
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.2e-36 157.5 162 59.9
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 1.8e-33 147.9 79 94.9
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.4e-25 121.7 96 63.5
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 6.7e-25 119.4 82 78.0
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 9.7e-24 115.5 170 45.3
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.1e-22 109.0 66 84.8
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 1.7e-20 104.8 66 71.2
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.7e-20 104.8 58 87.9
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 5.0e-20 103.2 163 43.6
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 2.1e-18 97.8 70 71.4
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 2.1e-18 97.8 60 78.3
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 5.2e-17 93.2 51 86.3
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.4e-16 90.5 78 61.5
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.4e-16 90.5 66 62.1
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 9.8e-16 89.0 153 40.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-15 87.8 51 84.3
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.7e-15 87.0 55 70.9
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-14 85.5 51 82.4
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.1e-14 83.6 55 76.4
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.7e-12 78.2 51 76.5
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.2e-12 77.8 57 61.4
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 5.0e-12 76.6 84 54.8
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.5e-11 75.1 73 54.8
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 3.2e-11 73.9 176 35.2
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 1.8e-09 68.2 75 56.0
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 7.5e-08 62.8 36 86.1


User provided reference genes

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