Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 3.3e-87 325.1 175 100.0
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 8.6e-43 177.6 175 55.4
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 6.1e-41 171.4 175 53.1
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 3.0e-40 169.1 174 52.3
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 4.0e-40 168.7 177 53.7
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 5.7e-39 164.9 175 52.0
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 9.8e-39 164.1 175 51.4
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 1.7e-38 163.3 167 53.9
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.1e-37 160.6 175 50.9
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 1.4e-37 160.2 175 46.3
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.8e-37 159.8 178 52.8
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 5.4e-37 158.3 175 50.9
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 3.5e-36 155.6 178 52.2
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 3.5e-36 155.6 175 49.7
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 4.6e-36 155.2 174 50.6
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 5.9e-36 154.8 167 53.9
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 2.9e-35 152.5 167 51.5
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 6.6e-35 151.4 175 48.6
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 1.1e-34 150.6 175 49.7
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 1.5e-34 150.2 175 48.6
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 2.5e-34 149.4 167 51.5
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 3.3e-34 149.1 169 50.9
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 3.3e-34 149.1 168 48.8
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 4.3e-34 148.7 175 47.4
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 7.3e-34 147.9 175 49.1
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 7.3e-34 147.9 175 49.1
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 9.5e-34 147.5 166 50.0
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 9.5e-34 147.5 175 48.0
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.6e-33 146.7 180 47.2
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 2.1e-33 146.4 167 50.9
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 2.8e-33 146.0 175 49.1
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.8e-33 146.0 173 48.0
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 3.6e-33 145.6 177 48.0
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 8.0e-33 144.4 176 47.7
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 2.3e-32 142.9 167 47.9
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 4.0e-32 142.1 173 46.8
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 5.2e-32 141.7 173 46.8
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 5.2e-32 141.7 175 45.7
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 6.8e-32 141.4 177 48.6
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.2e-31 140.6 176 51.1
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 2.6e-31 139.4 179 48.0
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 3.4e-31 139.0 175 49.1
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 1.3e-30 137.1 175 46.3
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 3.7e-30 135.6 179 48.0
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 1.4e-29 133.7 171 49.1
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 1.9e-29 133.3 175 45.7
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.9e-29 133.3 185 43.2
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 7.0e-29 131.3 179 46.9
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 2.7e-28 129.4 175 45.7
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 2.7e-28 129.4 142 52.8
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 3.5e-28 129.0 175 46.9
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 3.9e-27 125.6 175 42.9
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 3.9e-27 125.6 171 43.3
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 5.0e-27 125.2 171 43.3
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.5e-26 123.6 176 46.0
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 1.9e-26 123.2 181 42.0
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 1.9e-26 123.2 175 40.6
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 2.5e-26 122.9 175 43.4
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 2.5e-26 122.9 133 51.1
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 1.2e-25 120.6 175 43.4
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 2.1e-25 119.8 175 42.9
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.8e-25 119.4 165 40.6
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 2.8e-25 119.4 184 41.3
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 1.1e-24 117.5 184 42.9
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 1.4e-24 117.1 117 53.8
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 1.8e-24 116.7 145 46.2
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 5.2e-24 115.2 175 42.3
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 5.2e-24 115.2 177 44.1
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 6.8e-24 114.8 175 40.6
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 6.8e-24 114.8 175 40.0
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 1.2e-23 114.0 127 49.6
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 2.6e-23 112.8 173 43.9
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 4.4e-23 112.1 175 39.4
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 4.4e-23 112.1 175 39.4
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 7.5e-23 111.3 119 52.1
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 1.7e-22 110.2 182 41.2
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 3.7e-22 109.0 178 39.3
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 6.4e-22 108.2 167 41.3
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 6.4e-22 108.2 125 44.8
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 6.4e-22 108.2 185 41.1
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 8.3e-22 107.8 182 40.1
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 1.1e-21 107.5 116 50.9
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.9e-21 106.7 178 37.6
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 2.4e-21 106.3 167 41.3
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 2.4e-21 106.3 167 41.3
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 3.2e-21 105.9 180 41.7
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 5.4e-21 105.1 167 40.7
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 5.4e-21 105.1 167 40.7
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 5.4e-21 105.1 167 40.7
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 9.2e-21 104.4 176 39.2
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 1.6e-20 103.6 183 40.4
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 1.3e-19 100.5 148 41.9
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 5.1e-19 98.6 176 38.1
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.5e-18 97.1 176 39.8
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 4.3e-18 95.5 181 35.4
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 4.3e-18 95.5 176 38.1
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 4.3e-18 95.5 176 38.1
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 9.5e-18 94.4 205 35.1
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.1e-16 90.9 116 43.1
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 1.8e-16 90.1 173 33.5
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 1.3e-14 84.0 175 33.1
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 4.9e-14 82.0 125 44.0
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 8.4e-14 81.3 167 34.1
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 2.7e-12 76.3 147 38.1
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 3.9e-11 72.4 175 29.7
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 5.1e-11 72.0 124 41.1
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 1.9e-10 70.1 46 76.1
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 4.3e-10 68.9 51 64.7
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 7.3e-10 68.2 169 27.2
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 7.3e-10 68.2 105 36.2
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 9.6e-10 67.8 87 42.5
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 1.6e-09 67.0 136 35.3
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 3.6e-09 65.9 167 29.9
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 5.2e-08 62.0 193 33.7
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 8.9e-08 61.2 104 40.4
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 2.9e-06 56.2 146 33.6
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 3.8e-06 55.8 75 45.3


User provided reference genes

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