Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 1.0e-260 902.9 465 100.0
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.4e-145 520.4 466 58.2
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 4.3e-142 508.8 419 63.7
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 9.0e-140 501.1 466 56.0
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 3.2e-137 492.7 471 54.8
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.6e-136 490.3 471 54.6
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 6.7e-135 485.0 470 54.5
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 3.3e-134 482.6 465 54.4
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 2.1e-133 479.9 472 53.0
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 2.4e-132 476.5 469 53.3
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 6.9e-132 474.9 466 55.2
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 2.9e-130 469.5 471 53.1
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 4.9e-130 468.8 475 51.8
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 1.4e-129 467.2 467 53.1
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 2.1e-128 463.4 468 51.7
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 4.6e-128 462.2 470 52.6
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 6.0e-128 461.8 466 52.4
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 1.0e-127 461.1 468 51.9
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 2.3e-127 459.9 471 52.4
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 3.9e-127 459.1 466 51.9
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 4.3e-126 455.7 467 51.8
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 5.7e-126 455.3 481 51.6
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 9.6e-126 454.5 468 51.7
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 1.6e-125 453.8 469 49.5
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 3.7e-125 452.6 467 52.2
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 1.8e-124 450.3 472 50.4
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 6.9e-124 448.4 463 51.0
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 3.4e-123 446.0 464 49.6
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 1.0e-122 444.5 464 48.5
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 1.1e-121 441.0 464 51.1
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.9e-121 440.3 470 50.4
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 7.2e-121 438.3 472 50.6
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.5e-120 436.0 463 50.1
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 3.5e-120 436.0 467 50.3
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 7.9e-120 434.9 461 50.5
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 1.9e-118 430.3 472 49.8
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 3.3e-118 429.5 461 50.3
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 9.7e-118 427.9 468 50.0
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 3.7e-117 426.0 467 49.5
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 8.2e-117 424.9 467 48.6
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 8.2e-117 424.9 466 48.9
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 8.2e-117 424.9 467 47.8
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 1.8e-116 423.7 471 47.8
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 4.1e-116 422.5 461 49.7
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 2.6e-115 419.9 470 48.1
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 7.7e-115 418.3 467 47.5
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 1.0e-114 417.9 467 48.2
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.7e-114 417.2 468 47.9
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 2.2e-114 416.8 467 49.5
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 2.9e-114 416.4 467 47.3
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 6.5e-114 415.2 475 47.8
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 8.5e-114 414.8 470 48.7
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 1.1e-113 414.5 469 49.3
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 1.1e-113 414.5 465 48.8
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 1.4e-113 414.1 471 47.8
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 9.4e-113 411.4 461 48.2
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 1.2e-112 411.0 467 48.6
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 2.1e-112 410.2 442 50.0
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 7.9e-112 408.3 461 47.5
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.0e-111 407.9 465 48.0
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.4e-111 407.5 467 47.3
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.4e-111 407.5 467 47.3
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.4e-111 407.5 467 47.3
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 2.3e-111 406.8 468 47.2
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 1.5e-110 404.1 466 48.1
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 2.0e-110 403.7 472 48.9
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 3.3e-110 402.9 431 52.0
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.3e-109 401.0 440 52.5
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 1.8e-108 397.1 422 50.5
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 5.3e-108 395.6 473 47.8
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 7.7e-107 391.7 416 50.2
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.0e-106 391.3 473 47.4
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.7e-106 390.6 471 46.9
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 4.2e-105 386.0 473 46.9
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 7.2e-105 385.2 355 53.5
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.5e-102 377.5 464 46.8
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.7e-101 374.0 458 46.5
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 7.2e-97 358.6 418 48.8
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 4.7e-96 355.9 460 43.5
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.8e-95 354.0 437 46.7
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 6.7e-95 352.1 413 49.4
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 6.5e-90 335.5 407 46.4
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.5e-89 333.6 406 45.8
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.2e-89 333.2 366 49.7
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 4.2e-89 332.8 452 43.1
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 2.1e-88 330.5 417 46.3
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 6.3e-77 292.4 461 41.4
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 8.3e-77 292.0 232 60.8
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.1e-76 291.6 598 32.9
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 7.0e-76 288.9 356 48.0
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 8.0e-72 275.4 231 58.0
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 6.8e-63 245.7 255 52.2
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 9.2e-60 235.3 256 47.3
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 4.0e-55 219.9 334 42.5
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 7.5e-54 215.7 145 69.0
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.2e-53 214.2 452 35.8
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 1.1e-49 201.8 528 28.6
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 2.9e-45 187.2 319 38.2
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 7.3e-41 172.6 471 29.3
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 6.6e-34 149.4 528 25.4
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 3.3e-33 147.1 111 72.1
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 1.2e-30 138.7 456 30.9
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 5.8e-30 136.3 465 26.9
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 1.4e-28 131.7 121 56.2
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 3.9e-26 123.6 180 40.0
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 1.4e-23 115.2 456 28.1
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 2.4e-23 114.4 206 34.5
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 5.5e-20 103.2 176 39.8
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 8.7e-18 95.9 264 28.8
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 2.5e-17 94.4 96 47.9
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 7.4e-17 92.8 121 50.4
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 7.4e-17 92.8 150 40.0
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 4.9e-13 80.1 137 39.4
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 5.5e-12 76.6 121 36.4
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 2.1e-11 74.7 127 29.9
EL10Ac2g03657 Beta vulgaris HOM05D000159 ORTHO05D002729 1.5e-06 58.5 61 54.1


User provided reference genes

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