Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 0.0e+00 1246.5 655 100.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.7e-168 597.0 662 53.6
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.2e-160 570.1 722 50.3
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.5e-151 540.0 661 51.1
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-147 527.3 678 48.8
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.7e-144 517.3 662 48.2
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 4.6e-142 509.2 642 49.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 4.6e-142 509.2 664 48.6
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.8e-139 500.0 659 47.6
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 5.0e-136 489.2 668 47.6
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.2e-134 484.6 596 50.5
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.7e-134 483.4 665 46.6
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 5.1e-133 479.2 655 46.7
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 6.7e-133 478.8 661 47.0
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.6e-132 476.9 683 45.8
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 3.1e-130 469.9 661 46.6
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 4.5e-129 466.1 684 44.4
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 5.9e-129 465.7 670 44.2
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.7e-128 464.2 658 47.3
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 6.1e-126 455.7 655 46.3
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 1.4e-125 454.5 660 45.3
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.4e-125 454.5 660 47.3
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 2.3e-125 453.8 669 43.9
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.3e-125 453.8 658 45.6
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 6.7e-125 452.2 669 46.9
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 2.2e-123 447.2 668 44.5
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.4e-122 444.5 659 43.2
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.8e-122 444.1 663 45.7
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.1e-122 443.4 666 42.9
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.2e-121 441.4 664 44.1
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.2e-120 437.2 667 42.9
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.9e-120 436.8 662 43.4
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 5.0e-120 436.0 663 45.2
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 5.5e-119 432.6 661 43.4
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 9.4e-119 431.8 655 43.8
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.6e-118 431.0 662 44.4
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-118 430.3 650 46.0
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 8.0e-118 428.7 666 42.6
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.2e-116 424.9 661 43.1
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.5e-116 424.5 661 42.4
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 2.6e-116 423.7 510 51.6
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 3.4e-116 423.3 666 42.8
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 3.4e-116 423.3 662 43.7
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.7e-115 421.0 667 42.7
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.3e-115 419.1 661 42.1
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 1.1e-114 418.3 659 42.5
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.4e-114 417.9 667 42.3
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.4e-114 417.9 670 43.7
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 9.1e-114 415.2 658 44.4
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.7e-112 411.0 668 42.4
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.2e-112 410.6 647 41.9
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.5e-112 409.1 647 42.7
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 1.1e-111 408.3 659 42.3
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 6.1e-110 402.5 649 42.5
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 3.0e-109 400.2 671 40.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.0e-109 400.2 652 43.7
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 5.2e-109 399.4 664 41.1
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 5.2e-109 399.4 670 41.5
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 6.8e-109 399.1 646 42.0
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 8.8e-109 398.7 669 43.2
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.0e-108 397.5 669 41.9
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 2.6e-108 397.1 674 43.2
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.2e-107 394.0 668 43.1
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 2.8e-107 393.7 666 40.8
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 2.8e-107 393.7 660 40.6
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.8e-107 393.7 670 40.9
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.1e-106 389.8 639 43.0
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.0e-105 387.5 651 42.1
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 2.7e-105 387.1 678 41.0
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 1.3e-104 384.8 674 40.8
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 5.0e-104 382.9 699 39.8
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.6e-104 382.1 658 42.2
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-103 381.3 657 42.3
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.2e-102 378.3 660 41.2
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.6e-102 377.9 660 40.9
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 2.8e-102 377.1 688 38.8
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 3.6e-102 376.7 665 40.9
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.4e-101 374.8 666 39.3
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.2e-101 372.9 652 42.6
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.6e-100 370.5 655 40.5
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.4e-100 370.2 655 41.4
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 4.4e-100 369.8 659 39.0
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 5.7e-100 369.4 662 43.2
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 1.3e-99 368.2 655 40.6
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.4e-98 364.8 660 39.8
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.4e-98 364.0 659 38.8
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 4.1e-98 363.2 730 38.1
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 5.4e-98 362.8 572 43.9
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 3.9e-96 356.7 649 40.4
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 5.0e-96 356.3 587 44.0
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 6.6e-96 355.9 602 40.4
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 9.5e-95 352.1 648 41.2
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 3.6e-94 350.1 642 40.7
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 3.1e-93 347.1 660 39.5
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 2.6e-92 344.0 663 40.1
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 9.8e-92 342.0 733 38.5
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 2.2e-91 340.9 598 41.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 3.7e-91 340.1 768 34.5
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.4e-90 337.4 581 42.0
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.4e-90 337.4 577 40.2
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 8.6e-88 328.9 674 38.9
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-87 328.6 509 44.2
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.2e-86 325.1 648 38.4
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.2e-86 325.1 644 37.0
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.8e-85 321.2 638 40.8
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 2.3e-85 320.9 656 39.5
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 3.4e-84 317.0 744 36.3
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.2e-83 314.3 664 39.2
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.9e-83 313.9 592 41.6
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 2.4e-82 310.8 653 38.7
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 2.4e-82 310.8 683 36.9
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 4.1e-82 310.1 610 41.6
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 7.1e-82 309.3 319 56.7
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 7.1e-82 309.3 696 36.4
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.6e-81 308.1 658 38.8
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 2.7e-81 307.4 666 41.1
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 3.5e-81 307.0 658 38.4
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 6.0e-81 306.2 659 37.2
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 7.8e-81 305.8 654 39.3
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 3.0e-80 303.9 652 38.7
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.1e-79 302.0 652 37.4
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 3.3e-79 300.4 662 35.5
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 7.3e-79 299.3 658 35.1
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.1e-78 297.7 650 36.3
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 2.8e-78 297.4 581 37.5
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 6.2e-78 296.2 658 37.4
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 8.1e-78 295.8 655 34.8
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.1e-77 295.4 652 36.7
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.4e-77 295.0 658 35.3
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.8e-77 294.7 662 35.0
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 5.2e-77 293.1 525 40.6
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.8e-77 292.7 346 52.0
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 8.9e-77 292.4 697 37.0
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 2.6e-76 290.8 659 36.1
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 3.8e-75 287.0 595 37.0
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 8.4e-75 285.8 661 36.0
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.4e-74 285.0 569 36.2
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 7.1e-74 282.7 801 31.6
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 9.2e-74 282.3 398 46.2
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.1e-71 275.4 658 36.8
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 6.9e-69 266.2 568 37.7
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.4e-66 257.7 204 67.6
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 7.8e-65 252.7 265 53.6
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.4e-61 241.1 252 52.4
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.5e-60 238.4 333 45.0
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 3.2e-58 230.7 220 55.5
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 7.1e-58 229.6 588 34.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.3e-56 225.3 568 35.0
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 6.2e-54 216.5 430 40.0
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 6.2e-54 216.5 607 29.8
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.8e-53 214.9 281 45.2
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 9.9e-52 209.1 487 34.5
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-47 195.7 494 35.0
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.3e-47 194.1 252 45.6
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.4e-44 184.1 134 73.1
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.0e-35 156.0 277 44.4
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.7e-35 155.2 428 34.1
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.9e-35 154.5 185 51.4
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 1.3e-30 139.0 396 31.3
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.0e-28 131.7 114 62.3
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 5.9e-28 130.2 417 33.1
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 3.8e-27 127.5 430 31.6
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 8.5e-27 126.3 83 78.3
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.9e-26 125.2 200 40.0
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 7.2e-26 123.2 93 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.7e-22 112.1 313 29.7
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.1e-17 93.6 457 28.0
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 8.8e-16 89.7 65 69.2
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.4e-13 81.6 114 43.0
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 8.5e-11 73.2 148 46.6
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.2e-09 69.3 47 68.1
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.0e-08 64.7 116 40.5
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.0e-07 62.0 87 42.5


User provided reference genes

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