Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0000990 Simmondsia chinensis HOM05D000100 ORTHO05D389152 4.3e-34 147.5 80 100.0
Sc19g0001010 Simmondsia chinensis HOM05D000100 ORTHO05D000052 5.7e-26 120.6 80 82.5
Sc19g0000980 Simmondsia chinensis HOM05D000100 ORTHO05D000052 5.1e-19 97.4 78 67.9
Glyma.16G176000 Glycine max HOM05D000100 ORTHO05D000052 9.7e-10 66.6 78 47.4
Potri.017G150000 Populus trichocarpa HOM05D000100 ORTHO05D000052 1.7e-09 65.9 79 46.8
Sabra17G0125000 Salix brachista HOM05D000100 ORTHO05D000052 2.2e-09 65.5 79 45.6
GSVIVG01028807001 Vitis vinifera HOM05D000100 ORTHO05D000052 2.8e-09 65.1 79 40.5
Glyma.09G128400 Glycine max HOM05D000100 ORTHO05D000052 4.8e-09 64.3 79 44.3
CANSAT35G0448 Cannabis sativa HOM05D000100 ORTHO05D000052 1.1e-08 63.2 77 41.6
Eucgr.D00095 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.1e-08 63.2 78 42.3
Eucgr.D00097 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.1e-08 63.2 78 42.3
Eucgr.D00098 Eucalyptus grandis HOM05D000100 ORTHO05D000052 1.1e-08 63.2 78 42.3
QL09p012192 Quercus lobata HOM05D000100 ORTHO05D000052 1.1e-08 63.2 79 46.8
TAR624G1356 Trochodendron aralioides HOM05D000100 ORTHO05D000052 1.4e-08 62.8 79 44.3
QL02p025119 Quercus lobata HOM05D000100 ORTHO05D000052 3.1e-08 61.6 79 45.6
vmacro06608 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 3.1e-08 61.6 79 45.6
COL.COLO4_30281 Corchorus olitorius HOM05D000100 ORTHO05D000052 4.1e-08 61.2 77 42.9
Eucgr.A02706 Eucalyptus grandis HOM05D000100 ORTHO05D000052 4.1e-08 61.2 78 43.6
CANSAT21G1053 Cannabis sativa HOM05D000100 ORTHO05D000052 5.3e-08 60.8 77 40.3
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 5.3e-08 60.8 77 41.6
TWI39G0668 Tripterygium wilfordii HOM05D000100 ORTHO05D000052 5.3e-08 60.8 78 47.4
CANSAT35G0375 Cannabis sativa HOM05D000100 ORTHO05D000052 7.0e-08 60.5 78 41.0
Rhsim03G0192800 Rhododendron simsii HOM05D000100 ORTHO05D000052 7.0e-08 60.5 76 43.4
HPP92_008830 Vanilla planifolia HOM05D000100 ORTHO05D000052 9.1e-08 60.1 79 46.8
Dinv35273 Davidia involucrata HOM05D000100 ORTHO05D000052 1.2e-07 59.7 76 43.4
MD01G1210600 Malus domestica HOM05D000100 ORTHO05D000052 1.2e-07 59.7 77 44.2
Potri.012G035800 Populus trichocarpa HOM05D000100 ORTHO05D000052 1.2e-07 59.7 79 43.0
Haze_00068 Corylus avellana HOM05D000100 ORTHO05D000052 1.6e-07 59.3 78 43.6
Sabra17G0125100 Salix brachista HOM05D000100 ORTHO05D000052 1.6e-07 59.3 79 40.5
Cc00_g26730 Coffea canephora HOM05D000100 ORTHO05D000052 2.0e-07 58.9 79 41.8
Duzib205G0296 Durio zibethinus HOM05D000100 ORTHO05D000052 2.0e-07 58.9 78 46.2
Eucgr.A02700 Eucalyptus grandis HOM05D000100 ORTHO05D000052 2.0e-07 58.9 78 42.3
Manes.14G020800 Manihot esculenta HOM05D000100 ORTHO05D000052 2.0e-07 58.9 78 42.3
Nn2g14895 Nelumbo nucifera HOM05D000100 ORTHO05D000052 2.0e-07 58.9 79 44.3
Os05g0527100 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D000052 2.0e-07 58.9 75 44.0
Rhsim03G0194300 Rhododendron simsii HOM05D000100 ORTHO05D000052 2.0e-07 58.9 77 41.6
RcHm_v2.0_Chr1g0378931 Rosa chinensis HOM05D000100 ORTHO05D000052 2.0e-07 58.9 77 42.9
vmacro06609 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 2.0e-07 58.9 77 41.6
Cfa016310 Carpinus fangiana HOM05D000100 ORTHO05D000052 2.7e-07 58.5 79 41.8
Potri.004G069600 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.7e-07 58.5 79 44.3
Potri.012G036000 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.7e-07 58.5 79 44.3
QL09p012234 Quercus lobata HOM05D000100 ORTHO05D000052 2.7e-07 58.5 79 44.3
Dinv35272 Davidia involucrata HOM05D000100 ORTHO05D000052 3.5e-07 58.2 76 42.1
FAN28G1892 Fragaria x ananassa HOM05D000100 ORTHO05D000052 3.5e-07 58.2 77 42.9
Nn2g14894 Nelumbo nucifera HOM05D000100 ORTHO05D000052 3.5e-07 58.2 79 43.0
Thecc.03G186700 Theobroma cacao HOM05D000100 ORTHO05D000052 3.5e-07 58.2 77 46.8
Ah.01g017450 Amaranthus hybridus HOM05D000100 ORTHO05D000052 4.5e-07 57.8 76 42.1
Cc00_g26750 Coffea canephora HOM05D000100 ORTHO05D000052 4.5e-07 57.8 79 40.5
Eucgr.A02693 Eucalyptus grandis HOM05D000100 ORTHO05D000052 4.5e-07 57.8 80 45.0
Eucgr.A02703 Eucalyptus grandis HOM05D000100 ORTHO05D000052 4.5e-07 57.8 78 39.7
FvH4_7g30500 Fragaria vesca HOM05D000100 ORTHO05D000052 4.5e-07 57.8 78 42.3
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.5e-07 57.8 78 42.3
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.5e-07 57.8 78 42.3
Rhsim03G0192700 Rhododendron simsii HOM05D000100 ORTHO05D000052 4.5e-07 57.8 77 40.3
vmacro06611 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 4.5e-07 57.8 77 41.6
GSVIVG01028961001 Vitis vinifera HOM05D000100 ORTHO05D000052 4.5e-07 57.8 77 42.9
Dinv35277 Davidia involucrata HOM05D000100 ORTHO05D000052 5.9e-07 57.4 76 44.7
FAN01G2593 Fragaria x ananassa HOM05D000100 ORTHO05D000052 5.9e-07 57.4 78 42.3
Oeu049093.1 Olea europaea HOM05D000100 ORTHO05D000052 5.9e-07 57.4 79 41.8
Potri.004G069800 Populus trichocarpa HOM05D000100 ORTHO05D000052 5.9e-07 57.4 79 44.3
PGR042G3933 Punica granatum HOM05D000100 ORTHO05D000052 5.9e-07 57.4 77 44.2
QL09p012253 Quercus lobata HOM05D000100 ORTHO05D000052 5.9e-07 57.4 78 42.3
Rhsim03G0195300 Rhododendron simsii HOM05D000100 ORTHO05D000052 5.9e-07 57.4 78 43.6
EL10Ac3g05497 Beta vulgaris HOM05D000100 ORTHO05D000052 7.7e-07 57.0 78 42.3
CSS0024413 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D000052 7.7e-07 57.0 79 41.8
Ca_26900_v3 Cicer arietinum L. HOM05D000100 ORTHO05D000052 7.7e-07 57.0 78 43.6
FvH4_1g30110 Fragaria vesca HOM05D000100 ORTHO05D000052 7.7e-07 57.0 77 42.9
FAN19G1572 Fragaria x ananassa HOM05D000100 ORTHO05D000052 7.7e-07 57.0 77 42.9
MD07G1280800 Malus domestica HOM05D000100 ORTHO05D000052 7.7e-07 57.0 77 42.9
Phvul.004G103900 Phaseolus vulgaris HOM05D000100 ORTHO05D000052 7.7e-07 57.0 79 41.8
QL09p012238 Quercus lobata HOM05D000100 ORTHO05D000052 7.7e-07 57.0 78 43.6
QL09p012282 Quercus lobata HOM05D000100 ORTHO05D000052 7.7e-07 57.0 78 43.6
TAR624G0595 Trochodendron aralioides HOM05D000100 ORTHO05D000052 7.7e-07 57.0 79 40.5
vmacro06607 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 7.7e-07 57.0 79 41.8
Haze_00067 Corylus avellana HOM05D000100 ORTHO05D000052 1.0e-06 56.6 78 42.3
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.0e-06 56.6 78 41.0
PGR042G2288 Punica granatum HOM05D000100 ORTHO05D000052 1.0e-06 56.6 79 41.8
COL.COLO4_30285 Corchorus olitorius HOM05D000100 ORTHO05D000052 1.3e-06 56.2 72 45.8
Haze_00069 Corylus avellana HOM05D000100 ORTHO05D000052 1.3e-06 56.2 78 41.0
Duzib205G2018 Durio zibethinus HOM05D000100 ORTHO05D000052 1.3e-06 56.2 77 42.9
Thecc.03G186600 Theobroma cacao HOM05D000100 ORTHO05D000052 1.3e-06 56.2 78 44.9
vmacro06605 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 1.3e-06 56.2 78 42.3
CiPaw.06G005100 Carya illinoinensis HOM05D000100 ORTHO05D000052 1.7e-06 55.8 78 46.2
MD07G1281000 Malus domestica HOM05D000100 ORTHO05D000052 1.7e-06 55.8 77 42.9
Oeu049085.1 Olea europaea HOM05D000100 ORTHO05D000052 1.7e-06 55.8 79 44.3
QL09p012315 Quercus lobata HOM05D000100 ORTHO05D000052 1.7e-06 55.8 79 40.5
EL10Ac3g05388 Beta vulgaris HOM05D000100 ORTHO05D000052 2.2e-06 55.5 80 42.5
Cfa015398 Carpinus fangiana HOM05D000100 ORTHO05D000052 2.2e-06 55.5 80 40.0
Phvul.004G104100 Phaseolus vulgaris HOM05D000100 ORTHO05D000052 2.2e-06 55.5 79 40.5
QL09p012264 Quercus lobata HOM05D000100 ORTHO05D000052 2.2e-06 55.5 78 42.3
COL.COLO4_30284 Corchorus olitorius HOM05D000100 ORTHO05D000052 2.9e-06 55.1 76 40.8
Gorai.001G261700 Gossypium raimondii HOM05D000100 ORTHO05D000052 2.9e-06 55.1 79 41.8
Manes.10G133680 Manihot esculenta HOM05D000100 ORTHO05D000052 2.9e-06 55.1 78 41.0
Potri.015G027800 Populus trichocarpa HOM05D000100 ORTHO05D000052 2.9e-06 55.1 79 41.8
Sabra14G0127900 Salix brachista HOM05D000100 ORTHO05D000052 2.9e-06 55.1 78 44.9
Sabra15G0023000 Salix brachista HOM05D000100 ORTHO05D000052 2.9e-06 55.1 74 41.9
VMungo0464G0890 Vigna mungo HOM05D000100 ORTHO05D000052 2.9e-06 55.1 79 41.8
Glyma.09G127700 Glycine max HOM05D000100 ORTHO05D000052 3.8e-06 54.7 79 39.2
Glyma.16G175300 Glycine max HOM05D000100 ORTHO05D000052 3.8e-06 54.7 79 39.2
Manes.10G133650 Manihot esculenta HOM05D000100 ORTHO05D000052 3.8e-06 54.7 78 41.0
Os05g0527000 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D000052 3.8e-06 54.7 75 41.3
Potri.004G070900 Populus trichocarpa HOM05D000100 ORTHO05D000052 3.8e-06 54.7 79 41.8
Potri.015G027700 Populus trichocarpa HOM05D000100 ORTHO05D000052 3.8e-06 54.7 79 41.8
Sabra04G0046700 Salix brachista HOM05D000100 ORTHO05D000052 3.8e-06 54.7 78 44.9
Sabra17G0124900 Salix brachista HOM05D000100 ORTHO05D000052 3.8e-06 54.7 74 43.2
TWI39G0256 Tripterygium wilfordii HOM05D000100 ORTHO05D000052 3.8e-06 54.7 79 46.8
arahy.Tifrunner.gnm1.ann1.B8YTYR Arachis hypogaea HOM05D000100 ORTHO05D000052 5.0e-06 54.3 81 39.5
CiPaw.06G005000 Carya illinoinensis HOM05D000100 ORTHO05D000052 5.0e-06 54.3 78 44.9
Glyma.16G175400 Glycine max HOM05D000100 ORTHO05D000052 5.0e-06 54.3 79 40.5
Gorai.001G261800 Gossypium raimondii HOM05D000100 ORTHO05D000052 5.0e-06 54.3 79 40.5
Rhsim03G0194400 Rhododendron simsii HOM05D000100 ORTHO05D000052 5.0e-06 54.3 79 40.5
Sabra04G0046900 Salix brachista HOM05D000100 ORTHO05D000052 5.0e-06 54.3 78 44.9
Cfa016316 Carpinus fangiana HOM05D000100 ORTHO05D000052 6.5e-06 53.9 75 42.7
Duzib205G0283 Durio zibethinus HOM05D000100 ORTHO05D000052 6.5e-06 53.9 77 42.9
Migut.F00273 Erythranthe guttata HOM05D000100 ORTHO05D000052 6.5e-06 53.9 77 41.6
PGR102G0863 Punica granatum HOM05D000100 ORTHO05D000052 6.5e-06 53.9 87 37.9
TWI39G0931 Tripterygium wilfordii HOM05D000100 ORTHO05D000052 6.5e-06 53.9 79 43.0
vmacro06606 Vaccinium macrocarpon HOM05D000100 ORTHO05D000052 6.5e-06 53.9 78 39.7
CiPaw.06G004700 Carya illinoinensis HOM05D000100 ORTHO05D000052 8.5e-06 53.5 78 44.9
AUR62021089 Chenopodium quinoa HOM05D000100 ORTHO05D000052 8.5e-06 53.5 80 38.8
DCAR_020283 Daucus carota HOM05D000100 ORTHO05D000052 8.5e-06 53.5 80 40.0
Eucgr.A02689 Eucalyptus grandis HOM05D000100 ORTHO05D000052 8.5e-06 53.5 80 42.5
Manes.10G133662 Manihot esculenta HOM05D000100 ORTHO05D000052 8.5e-06 53.5 78 39.7
Manes.10G133707 Manihot esculenta HOM05D000100 ORTHO05D000052 8.5e-06 53.5 78 39.7
Rhsim03G0193700 Rhododendron simsii HOM05D000100 ORTHO05D000052 8.5e-06 53.5 79 40.5
Sabra04G0046800 Salix brachista HOM05D000100 ORTHO05D000052 8.5e-06 53.5 78 44.9


User provided reference genes

Program Settings