Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 2.4e-165 585.5 308 100.0
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 2.9e-134 482.3 309 81.2
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 4.9e-134 481.5 278 88.1
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 3.2e-133 478.8 278 88.1
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 8.6e-131 470.7 273 87.5
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 2.4e-125 452.6 292 81.2
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 3.5e-124 448.7 312 75.6
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 3.9e-123 445.3 305 75.4
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.3e-122 442.2 305 75.1
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 2.1e-121 439.5 292 75.3
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 1.8e-120 436.4 305 73.8
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 4.0e-120 435.3 290 76.2
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 2.0e-119 433.0 295 75.3
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 5.8e-119 431.4 295 74.9
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 5.8e-119 431.4 305 72.5
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 1.3e-118 430.3 275 77.8
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 1.1e-117 427.2 307 72.6
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 1.4e-117 426.8 305 71.8
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 1.4e-117 426.8 305 72.1
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 1.9e-117 426.4 305 71.1
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 2.4e-117 426.0 307 72.0
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 3.2e-117 425.6 289 73.4
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 3.2e-117 425.6 312 70.2
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 4.1e-117 425.2 311 71.7
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 9.2e-117 424.1 311 71.1
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 9.2e-117 424.1 305 72.5
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 2.7e-116 422.5 314 71.3
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 2.7e-116 422.5 305 70.2
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.7e-116 422.5 305 70.5
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 1.0e-115 420.6 305 69.5
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 1.0e-115 420.6 305 70.8
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.3e-115 420.2 305 72.5
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 1.7e-115 419.9 305 71.5
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 2.3e-115 419.5 305 72.5
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.3e-115 419.5 305 72.5
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 2.3e-115 419.5 305 70.2
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 3.0e-115 419.1 271 74.9
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 5.1e-115 418.3 305 72.1
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 6.6e-115 417.9 320 67.8
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 6.6e-115 417.9 320 67.8
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.6e-115 417.9 305 71.8
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 6.6e-115 417.9 305 71.1
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 2.5e-114 416.0 295 71.5
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 3.3e-114 415.6 305 69.5
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 4.3e-114 415.2 310 70.3
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 7.3e-114 414.5 273 75.5
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 1.2e-113 413.7 305 68.9
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.6e-113 413.3 272 74.6
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 2.1e-113 412.9 300 71.0
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 6.2e-113 411.4 307 68.7
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 6.2e-113 411.4 305 69.5
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 6.2e-113 411.4 274 75.5
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 1.1e-112 410.6 310 70.0
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 1.8e-112 409.8 306 70.6
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 4.0e-112 408.7 291 70.1
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 5.2e-112 408.3 305 67.2
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 6.9e-112 407.9 309 68.0
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 1.2e-111 407.1 305 67.2
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 2.0e-111 406.4 307 67.4
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 3.4e-111 405.6 305 67.2
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 3.4e-111 405.6 299 70.2
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 5.8e-111 404.8 305 67.2
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 9.9e-111 404.1 312 67.0
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.9e-110 402.5 307 66.4
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 3.8e-110 402.1 308 69.8
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 3.8e-110 402.1 308 69.8
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 3.8e-110 402.1 305 66.6
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 4.9e-110 401.7 305 66.2
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 8.4e-110 401.0 310 66.8
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 1.4e-109 400.2 305 68.5
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 3.2e-109 399.1 272 72.4
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 4.2e-109 398.7 304 67.4
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 9.3e-109 397.5 278 75.2
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.2e-108 397.1 271 72.3
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 2.7e-108 396.0 295 68.5
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 4.6e-108 395.2 316 67.7
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 2.3e-107 392.9 334 61.7
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 2.3e-107 392.9 309 67.3
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 3.0e-107 392.5 353 60.6
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 6.6e-107 391.3 308 67.9
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 7.3e-106 387.9 309 66.7
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 6.2e-105 384.8 310 67.1
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 6.2e-105 384.8 316 65.8
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 8.1e-105 384.4 315 66.3
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 1.4e-104 383.6 310 66.5
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 3.5e-100 369.0 290 64.1
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 1.3e-99 367.1 280 66.8
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 1.1e-98 364.0 305 62.6
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 2.5e-98 362.8 277 67.5
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 1.4e-96 357.1 326 62.3
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 9.0e-96 354.4 323 59.4
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 2.0e-95 353.2 307 60.9
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 4.2e-93 345.5 319 58.9
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.2e-92 344.0 345 55.4
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 5.8e-87 325.1 283 58.7
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 7.6e-87 324.7 269 62.1
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 1.8e-83 313.5 305 55.1
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.3e-81 307.4 231 71.0
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 4.5e-79 298.9 237 67.5
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.9e-78 296.2 274 56.6
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 3.8e-78 295.8 239 66.1
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 2.7e-76 289.7 202 73.8
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 4.5e-71 272.3 271 52.8
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 8.8e-67 258.1 262 57.3
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 3.2e-61 239.6 213 62.4
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 2.3e-59 233.4 265 46.0
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 1.3e-54 217.6 277 42.2
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 5.3e-48 195.7 153 68.0
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 4.5e-47 192.6 320 38.8
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.1e-45 188.0 155 65.8
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 3.0e-43 179.9 305 36.1
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 4.1e-40 169.5 212 43.9
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 5.0e-38 162.5 215 40.9
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.6e-36 156.4 182 50.5
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.6e-31 141.0 116 64.7
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.8e-28 130.2 87 74.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 7.5e-26 122.1 208 37.0
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 8.9e-19 98.6 74 62.2
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 2.2e-17 94.0 135 45.2
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 3.2e-16 90.1 93 50.5
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 1.9e-13 80.9 82 53.7
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 2.2e-09 67.4 79 50.6
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 4.1e-08 63.2 57 47.4


User provided reference genes

Program Settings