Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 2.4e-162 575.5 295 100.0
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.6e-97 358.6 305 63.3
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.0e-96 357.5 274 69.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 2.3e-93 346.3 279 63.4
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 6.4e-83 311.6 274 59.1
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 6.4e-83 311.6 277 59.6
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 6.4e-83 311.6 276 57.2
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.9e-82 310.1 213 70.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 5.4e-82 308.5 281 58.0
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 2.1e-81 306.6 272 56.2
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 2.1e-81 306.6 272 59.6
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 1.3e-80 303.9 267 56.9
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 2.3e-80 303.1 272 55.5
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 3.9e-80 302.4 272 55.9
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 8.7e-80 301.2 267 58.8
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.5e-79 300.4 278 57.2
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 7.3e-79 298.1 262 58.0
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.2e-78 297.4 284 54.9
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.2e-78 297.4 300 55.3
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.6e-78 295.8 272 55.5
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 8.1e-78 294.7 300 55.0
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.4e-77 293.9 299 54.2
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.4e-77 293.9 272 54.8
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.8e-77 293.5 298 55.7
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 2.4e-77 293.1 278 55.8
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.4e-77 293.1 272 57.4
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.9e-77 291.6 267 58.8
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 6.9e-77 291.6 278 56.5
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 9.0e-77 291.2 278 57.9
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 1.2e-76 290.8 276 55.4
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.2e-76 290.8 285 54.7
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.5e-76 290.4 269 56.5
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.5e-76 290.4 272 57.0
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 2.0e-76 290.0 279 58.1
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.0e-76 290.0 267 58.1
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 2.0e-76 290.0 266 58.3
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 2.6e-76 289.7 297 53.5
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.6e-76 289.7 266 58.6
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 2.6e-76 289.7 268 57.1
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 5.8e-76 288.5 299 52.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 5.8e-76 288.5 285 53.3
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 7.6e-76 288.1 278 55.0
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 9.9e-76 287.7 268 54.1
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 9.9e-76 287.7 273 56.8
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 1.7e-75 287.0 297 55.6
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.2e-75 286.6 280 57.5
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 2.2e-75 286.6 282 53.2
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 2.2e-75 286.6 297 54.2
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 2.9e-75 286.2 269 55.0
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 3.8e-75 285.8 297 54.5
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 3.8e-75 285.8 297 54.5
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 3.8e-75 285.8 226 63.3
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 3.8e-75 285.8 284 53.9
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 6.4e-75 285.0 280 55.7
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 8.4e-75 284.6 273 53.8
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 2.4e-74 283.1 226 63.3
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 4.2e-74 282.3 276 56.5
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 9.3e-74 281.2 282 55.7
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.2e-73 280.8 269 55.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 1.6e-73 280.4 210 62.4
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.1e-73 280.0 267 57.7
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.7e-73 279.6 298 53.4
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.5e-73 279.3 273 54.9
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 6.0e-73 278.5 269 55.0
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 6.0e-73 278.5 282 53.5
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 7.8e-73 278.1 268 56.7
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.7e-72 276.9 275 53.5
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.7e-72 276.9 207 65.7
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.7e-72 276.9 215 60.9
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.3e-72 276.6 213 60.6
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 2.3e-72 276.6 282 53.5
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.0e-72 276.2 294 54.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 5.1e-72 275.4 276 52.5
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 8.7e-72 274.6 230 59.6
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.5e-71 273.9 306 53.9
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 5.6e-71 271.9 307 52.1
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.3e-70 270.8 272 52.6
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.3e-70 270.8 211 62.6
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.1e-70 270.0 217 59.9
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 2.8e-70 269.6 228 58.3
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 3.6e-70 269.2 282 52.5
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 3.6e-70 269.2 273 53.5
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 3.6e-70 269.2 286 50.3
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 6.2e-70 268.5 266 52.6
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 6.2e-70 268.5 277 55.2
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.1e-69 267.7 283 53.0
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 4.0e-69 265.8 288 51.0
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.0e-69 265.8 327 48.9
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.0e-69 265.8 288 51.4
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 9.0e-69 264.6 265 55.8
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.6e-68 263.1 210 61.0
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 4.5e-68 262.3 266 53.8
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 9.9e-68 261.2 267 53.2
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.3e-67 260.8 267 52.1
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.7e-67 260.4 271 55.0
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.7e-67 260.4 281 50.5
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 2.9e-67 259.6 279 52.0
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.4e-67 258.1 262 53.1
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 9.3e-66 254.6 211 60.2
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 9.3e-66 254.6 211 60.2
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 4.6e-65 252.3 227 56.4
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.0e-64 249.6 281 49.8
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.9e-63 246.9 220 55.0
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.9e-63 246.9 220 55.0
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.6e-63 245.4 249 55.8
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 6.2e-62 241.9 221 59.3
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.4e-61 240.0 210 59.0
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 6.4e-59 231.9 223 52.0
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 2.5e-58 229.9 202 55.0
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.5e-55 219.9 201 54.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.9e-50 203.8 217 49.3
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 7.9e-49 198.4 205 50.7
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.3e-48 196.8 212 51.9
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 9.7e-47 191.4 259 42.9
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 3.4e-44 183.0 169 56.8
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.7e-41 173.3 225 44.0
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 5.1e-40 169.1 219 43.4
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 7.4e-39 165.2 215 41.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.8e-37 160.6 181 46.4
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.5e-36 157.5 223 43.0
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.1e-34 151.4 248 36.7
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 1.4e-34 151.0 254 40.2
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 9.7e-31 138.3 215 40.5
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 6.3e-30 135.6 177 45.2
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 8.0e-25 118.6 122 51.6
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.0e-24 116.7 117 49.6
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.2e-22 110.5 149 41.6
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 2.1e-17 94.0 57 68.4
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 4.7e-17 92.8 173 39.3
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.0e-15 87.4 98 49.0
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.4e-15 86.7 51 68.6
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 5.7e-15 85.9 151 36.4
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 2.2e-14 84.0 86 48.8
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 5.0e-11 72.8 81 42.0


User provided reference genes

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