Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0000060 Simmondsia chinensis HOM05D000188 ORTHO05D008781 4.0e-119 431.4 211 100.0
ClCG01G005410 Citrullus lanatus HOM05D000188 ORTHO05D008781 4.6e-75 285.0 209 69.9
Ciclev10030616m.g Citrus clementina HOM05D000188 ORTHO05D008781 1.0e-74 283.9 209 68.4
PGR102G0056 Punica granatum HOM05D000188 ORTHO05D008781 3.9e-74 282.0 209 68.9
Actinidia28899 Actinidia chinensis HOM05D000188 ORTHO05D008781 8.7e-74 280.8 209 68.9
Thecc.05G229200 Theobroma cacao HOM05D000188 ORTHO05D008781 1.9e-73 279.6 209 67.5
Sed0008561 Sechium edule HOM05D000188 ORTHO05D008781 2.5e-73 279.3 209 67.9
CsaV3_5G005650 Cucumis sativus L. HOM05D000188 ORTHO05D008781 5.6e-73 278.1 209 67.9
Actinidia08784 Actinidia chinensis HOM05D000188 ORTHO05D008781 1.6e-72 276.6 209 68.4
Actinidia24629 Actinidia chinensis HOM05D000188 ORTHO05D008781 1.6e-72 276.6 209 68.4
MELO3C005388.2 Cucumis melo HOM05D000188 ORTHO05D008781 2.1e-72 276.2 209 67.9
Manes.08G158300 Manihot esculenta HOM05D000188 ORTHO05D008781 2.8e-72 275.8 211 67.8
Potri.013G073900 Populus trichocarpa HOM05D000188 ORTHO05D008781 2.8e-72 275.8 209 68.4
COL.COLO4_35630 Corchorus olitorius HOM05D000188 ORTHO05D008781 6.2e-72 274.6 209 66.5
Eucgr.A02997 Eucalyptus grandis HOM05D000188 ORTHO05D008781 6.2e-72 274.6 209 67.5
Sabra13G0064100 Salix brachista HOM05D000188 ORTHO05D008781 6.2e-72 274.6 209 67.5
DCAR_010524 Daucus carota HOM05D000188 ORTHO05D008781 1.1e-71 273.9 209 66.5
Aqoxy7G00904 Aquilegia oxysepala HOM05D000188 ORTHO05D008781 1.4e-71 273.5 209 67.0
Gorai.007G248100 Gossypium raimondii HOM05D000188 ORTHO05D008781 1.4e-71 273.5 209 67.0
MSTRG.26918 Avicennia marina HOM05D000188 ORTHO05D008781 4.0e-71 271.9 209 66.5
Gohir.D11G235400 Gossypium hirsutum HOM05D000188 ORTHO05D008781 4.0e-71 271.9 209 66.5
Gohir.A11G221800 Gossypium hirsutum HOM05D000188 ORTHO05D008781 5.3e-71 271.6 209 66.0
SGA_v2.0_scaffold244G44328 Striga asiatica HOM05D000188 ORTHO05D008781 9.0e-71 270.8 209 66.5
Sed0018723 Sechium edule HOM05D000188 ORTHO05D008781 1.2e-70 270.4 209 66.0
TWI60G1287 Tripterygium wilfordii HOM05D000188 ORTHO05D008781 3.4e-70 268.9 209 64.6
Cfa016122 Carpinus fangiana HOM05D000188 ORTHO05D008781 5.8e-70 268.1 210 66.2
Nn1g09370 Nelumbo nucifera HOM05D000188 ORTHO05D008781 5.8e-70 268.1 210 67.6
Peaxi162Scf00516g00430 Petunia axillaris HOM05D000188 ORTHO05D008781 5.8e-70 268.1 209 66.0
QL09p005917 Quercus lobata HOM05D000188 ORTHO05D008781 9.9e-70 267.3 209 65.6
Atru.chr2.1726 Acer truncatum HOM05D000188 ORTHO05D008781 2.9e-69 265.8 212 66.0
Atru.chr2.1731 Acer truncatum HOM05D000188 ORTHO05D008781 2.9e-69 265.8 212 66.0
CiPaw.05G210300 Carya illinoinensis HOM05D000188 ORTHO05D008781 2.9e-69 265.8 210 65.7
C04p43530 Brassica napus HOM05D000188 ORTHO05D008781 3.8e-69 265.4 209 63.2
BolC4t25933H Brassica oleracea HOM05D000188 ORTHO05D008781 3.8e-69 265.4 209 63.2
AUR62028216 Chenopodium quinoa HOM05D000188 ORTHO05D008781 3.8e-69 265.4 209 63.2
Rhsim03G0225800 Rhododendron simsii HOM05D000188 ORTHO05D008781 6.4e-69 264.6 210 65.2
AL7G44890 Arabidopsis lyrata HOM05D000188 ORTHO05D008781 8.4e-69 264.2 209 63.2
AUR62002098 Chenopodium quinoa HOM05D000188 ORTHO05D008781 8.4e-69 264.2 209 63.2
AT5G35970 Arabidopsis thaliana HOM05D000188 ORTHO05D008781 1.1e-68 263.8 209 63.6
CAN.G732.28 Capsicum annuum HOM05D000188 ORTHO05D008781 1.1e-68 263.8 209 65.6
Sp7g06150 Schrenkiella parvula HOM05D000188 ORTHO05D008781 1.1e-68 263.8 209 62.7
PGSC0003DMG400026493 Solanum tuberosum HOM05D000188 ORTHO05D008781 1.1e-68 263.8 209 63.6
Carub.0007s3175 Capsella rubella HOM05D000188 ORTHO05D008781 3.2e-68 262.3 209 62.7
EL10Ac1g01289 Beta vulgaris HOM05D000188 ORTHO05D008781 4.2e-68 261.9 209 62.2
A04p10060 Brassica napus HOM05D000188 ORTHO05D008781 4.2e-68 261.9 209 62.7
CARHR216680 Cardamine hirsuta HOM05D000188 ORTHO05D008781 4.2e-68 261.9 209 62.2
Cpa.g.sc73.90 Carica papaya HOM05D000188 ORTHO05D008781 4.2e-68 261.9 209 64.1
BraA04t16668Z Brassica rapa HOM05D000188 ORTHO05D008781 5.4e-68 261.5 209 62.7
Ca_26295_v3 Cicer arietinum L. HOM05D000188 ORTHO05D008781 1.2e-67 260.4 211 63.5
Lsat_1_v5_gn_9_48021 Lactuca sativa HOM05D000188 ORTHO05D008781 1.2e-67 260.4 210 62.9
Sopen03g028130 Solanum pennellii HOM05D000188 ORTHO05D008781 1.2e-67 260.4 209 63.6
Duzib177G0630 Durio zibethinus HOM05D000188 ORTHO05D008781 2.1e-67 259.6 209 63.2
Nitab4.5_0000021g0910 Nicotiana tabacum HOM05D000188 ORTHO05D008781 2.1e-67 259.6 209 64.1
Psat6g101880 Pisum sativum HOM05D000188 ORTHO05D008781 2.7e-67 259.2 211 64.0
Nitab4.5_0005545g0030 Nicotiana tabacum HOM05D000188 ORTHO05D008781 3.5e-67 258.8 209 63.2
Solyc03g097370.4 Solanum lycopersicum HOM05D000188 ORTHO05D008781 3.5e-67 258.8 209 63.2
Hund09814 Selenicereus undatus HOM05D000188 ORTHO05D008781 6.0e-67 258.1 209 64.1
Aa31LG9G17940 Aethionema arabicum HOM05D000188 ORTHO05D008781 1.3e-66 256.9 209 62.2
THA.LOC104823790 Tarenaya hassleriana HOM05D000188 ORTHO05D008781 1.3e-66 256.9 209 61.2
TPR.G30236 Trifolium pratense HOM05D000188 ORTHO05D008781 1.3e-66 256.9 212 63.2
Lj6g0025975 Lotus japonicus HOM05D000188 ORTHO05D008781 1.7e-66 256.5 211 64.0
Medtr1g040155 Medicago truncatula HOM05D000188 ORTHO05D008781 1.7e-66 256.5 211 63.5
Dinv19310 Davidia involucrata HOM05D000188 ORTHO05D008781 3.0e-66 255.8 220 63.6
ECA232G2771 Erigeron canadensis HOM05D000188 ORTHO05D008781 3.0e-66 255.8 209 62.2
HanXRQChr16g0512181 Helianthus annuus HOM05D000188 ORTHO05D008781 2.5e-65 252.7 209 61.7
Lj3A882G54 Lonicera japonica HOM05D000188 ORTHO05D008781 4.3e-65 251.9 216 65.3
Lalb_Chr01g0020661 Lupinus albus HOM05D000188 ORTHO05D008781 1.3e-64 250.4 212 61.8
Ah.04g156110 Amaranthus hybridus HOM05D000188 ORTHO05D008781 6.2e-64 248.1 209 59.3
CSS0011538 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D008781 6.2e-64 248.1 209 64.6
arahy.Tifrunner.gnm1.ann1.JCMX0M Arachis hypogaea HOM05D000188 ORTHO05D008781 8.1e-64 247.7 214 62.1
Migut.H00001 Erythranthe guttata HOM05D000188 ORTHO05D008781 1.1e-63 247.3 211 63.0
arahy.Tifrunner.gnm1.ann1.GEGB9W Arachis hypogaea HOM05D000188 ORTHO05D008781 1.8e-63 246.5 214 62.1
Phvul.007G280900 Phaseolus vulgaris HOM05D000188 ORTHO05D008781 9.0e-63 244.2 209 60.8
VMungo0720G2754 Vigna mungo HOM05D000188 ORTHO05D008781 1.5e-62 243.4 209 60.8
ATR0568G207 Amborella trichopoda HOM05D000188 ORTHO05D008781 7.6e-62 241.1 213 59.2
Glyma.02G001000 Glycine max HOM05D000188 ORTHO05D008781 8.4e-61 237.7 212 59.9
Glyma.10G000200 Glycine max HOM05D000188 ORTHO05D008781 1.9e-60 236.5 213 59.6
Thhalv10003611m.g Eutrema salsugineum HOM05D000188 ORTHO05D008781 3.5e-59 232.3 184 64.1
CSS0036066 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D008781 3.7e-56 222.2 175 68.6
GSVIVG01024253001 Vitis vinifera HOM05D000188 ORTHO05D008781 3.7e-56 222.2 170 67.1
Cc02_g00010 Coffea canephora HOM05D000188 ORTHO05D008781 5.8e-54 214.9 170 64.7
SEGI_19094 Sequoiadendron giganteum HOM05D000188 ORTHO05D008781 8.4e-53 211.1 209 52.6
PSO675G8488 Papaver somniferum HOM05D000188 ORTHO05D008781 1.1e-52 210.7 233 52.4
PSO502G0008 Papaver somniferum HOM05D000188 ORTHO05D008781 2.5e-52 209.5 233 51.9
Lalb_Chr03g0037951 Lupinus albus HOM05D000188 ORTHO05D008781 7.9e-51 204.5 200 55.5
Os09g0130800 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D008781 6.7e-50 201.4 213 52.1
CDE11G0723 Ceratophyllum demersum HOM05D000188 ORTHO05D008781 4.3e-49 198.7 209 51.2
Actinidia24511 Actinidia chinensis HOM05D000188 ORTHO05D008781 2.6e-46 189.5 163 63.2
Pp3c5_28660 Physcomitrium patens HOM05D000188 ORTHO05D008781 6.1e-35 151.8 209 41.6
arahy.Tifrunner.gnm1.ann1.R2W1IV Arachis hypogaea HOM05D000223 ORTHO05D026897 3.7e-32 142.5 192 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1489 Anthoceros agrestis HOM05D000188 ORTHO05D008781 1.8e-31 140.2 209 40.7
Mapoly0024s0074 Marchantia polymorpha HOM05D000188 ORTHO05D008781 1.8e-31 140.2 210 41.4
TAR629G3326 Trochodendron aralioides HOM05D000188 ORTHO05D008781 1.0e-29 134.4 101 67.3
Haze_00340 Corylus avellana HOM05D000188 ORTHO05D008781 9.4e-28 127.9 97 66.0
SMO118G0482 Selaginella moellendorffii HOM05D000188 ORTHO05D008781 4.1e-23 112.5 175 38.9
arahy.Tifrunner.gnm1.ann1.6W0043 Arachis hypogaea HOM05D001315 ORTHO05D026897 2.2e-21 106.7 77 64.9
arahy.Tifrunner.gnm1.ann1.N1RTLE Arachis hypogaea HOM05D000188 ORTHO05D008781 2.8e-16 89.7 67 64.2
TAR629G0071 Trochodendron aralioides HOM05D000188 ORTHO05D008781 3.5e-14 82.8 50 80.0
Zm00001eb309350 Zea mays HOM05D000188 ORTHO05D008781 3.4e-09 66.2 97 40.2
vmacro06356 Vaccinium macrocarpon HOM05D000188 ORTHO05D008781 4.8e-08 62.4 64 54.7


User provided reference genes

Program Settings